Basic Information

Insect: Sycophila quercilanae
Gene Symbol: su(Hw)
Assembly: GCA_035582995.1
Location: JAWWEP010004812.1:8142-19153[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.24 28 6.2 3.3 1 23 24 47 24 47 0.96

2 13 0.00066 0.075 14.2 0.2 2 22 54 74 53 74 0.93

3 13 0.64 73 4.9 2.0 2 20 169 187 168 189 0.83

4 13 9.5e-05 0.011 16.9 2.0 3 21 207 225 206 226 0.95

5 13 0.011 1.3 10.4 0.7 1 23 234 257 234 257 0.96

6 13 0.00011 0.012 16.7 1.8 1 19 266 284 266 287 0.94

7 13 0.0067 0.76 11.1 7.4 1 23 295 318 295 318 0.95

8 13 2.5 2.8e+02 3.0 6.7 1 21 563 583 563 584 0.94

9 13 1.7e-05 0.0019 19.3 1.5 2 23 593 615 593 615 0.96

10 13 0.00035 0.04 15.1 0.4 1 21 625 645 625 646 0.93

11 13 0.056 6.3 8.2 3.5 1 23 654 677 654 677 0.96

12 13 7.7e-05 0.0087 17.2 1.3 1 19 687 705 687 707 0.96

13 13 0.4 46 5.5 4.1 1 23 714 737 714 737 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.24	28	6.2	3.3	1	23	24	47	24	47	0.96
2	13	0.00066	0.075	14.2	0.2	2	22	54	74	53	74	0.93
3	13	0.64	73	4.9	2.0	2	20	169	187	168	189	0.83
4	13	9.5e-05	0.011	16.9	2.0	3	21	207	225	206	226	0.95
5	13	0.011	1.3	10.4	0.7	1	23	234	257	234	257	0.96
6	13	0.00011	0.012	16.7	1.8	1	19	266	284	266	287	0.94
7	13	0.0067	0.76	11.1	7.4	1	23	295	318	295	318	0.95
8	13	2.5	2.8e+02	3.0	6.7	1	21	563	583	563	584	0.94
9	13	1.7e-05	0.0019	19.3	1.5	2	23	593	615	593	615	0.96
10	13	0.00035	0.04	15.1	0.4	1	21	625	645	625	646	0.93
11	13	0.056	6.3	8.2	3.5	1	23	654	677	654	677	0.96
12	13	7.7e-05	0.0087	17.2	1.3	1	19	687	705	687	707	0.96
13	13	0.4	46	5.5	4.1	1	23	714	737	714	737	0.94

Sequence Information

Coding Sequence: ATGAAGTTGGATGACCGACTGAGTTTAAGGCAGCACAGGCTACATCAGTGTGTGAAGAGTTCTACCCTCTACAAATGCGAACACTGCAACTTCTTGACTGTACATAAGGGAGACCTACCCAGACATCTGGAGCGTAAACACGGAGAACGCGAGAACTTGCCTTGTCCTAATTGTGGCAAAAAGTACAAGGGCGACTTCAATCTGCAGCAACATCTGAAGCGAGACTGCAACGTTGTCAAGCGATTTACTTGCGCCCATTGCAgtaaTGGTCACGTaacacctaaaaaaaaatcaattaatggAGCCAAAAAATTATCCGAAGAATTATGTACTGaCAAGGGTATCCAAACTACCAATGGAAAAATTAAGGAGCGTGGAGCAGAAAGATATACTTGCCCACCAGAGCTGATCTTGCTGCACTGCCCCAAATGCCAGGACTCCTTCGAGAAGCCGCCGCGCAAGAAGGTGAGCTCCTGCACGCGCTGCGACTCTCCGTTTCTGCTGCAGTGCTCCAAATGCCGCAAGATTTTCCGCAAGTACATGACCCTTTACTGCCACATAAAGGCAATCTGCGGTAATCGCAATCCCGAGGCCGAGCCCAAGGACGGTCGAGTGGCCTGCTCCGACTGCGGCACCAAGTTCTGCAGCTATGAGAATCTTCGCCGACATAAGCGGCTCACCTGCCAGAAGCAGGCGGCGTACAAGTGTACCTCCTGCAGCTTCGTCAGCCGGTACAAGGCCTCTTTGGAGCTGCACGTGAGGGGCCAGCACCTGGGTAATGGCACGGAGGAGGTGCATCGGTGCGGCTGGTGCGGAAAGGGATTCAGCCACTCACAGACTCTCAAGCGACACGAGACCTACATCTGCGGCAAGGAGAAGAACTTCTTCTGCGGTCACTGCGACTACAAGTGCTATCTGAAATATCAGCTCAAGAAGCACATGAGGGCTAAGCACAAGCGGCTCTTCACTAAGGGAGAAACATTCCCTCGGTTATCCGGTGGAATTTACATAAAGGAAGAGATAACCATTGAATCTCAATCATCATCTGCAGATGTTCAAACTGAGTCCTTCACTGAGGAAAAAAGTCATCCGTCTGaTTCATTTATATACATCAGCGATAGTACTGCGGATGAAGATTCTAATACGGGCAATGGATCTGGCAACAATATTCATCAAGATGCGCCAAACAGTGAAGTTGACATTGACGAACATCAAGATATTATTCACATAAAGGAAGAAATTATATCAGACGATGAACTTCTGTGTTATTCTCCTATTAATTttgaagAGATACATGAGGATTTTGAGGTAACCGAAGAAAGCGTTGACAAGTTTTCCTTTGAAAAGATTGGAACTGTACCAAATCCTATTACTACAATCCCGGCAGATGTAAATGATGAATCAATTATTACCCTCGTAAATGAATCGATTTTTACTCCTATGAATGAATCAGTTATGATACAGACGGAAGAAAGCAAAAGGATTGAAGAGCCAAAAGCGGGTGGATCACATGAAGCAGTTGTAGTGCCTGCACATACATTGATTAGACGGCAGTGGGCATACAATCCTCGCCGCCCTTCAGGTCAGCTAAAGTCCGTGCTACACTGCCCCAGCTGCAAGGACGACCCCCGGCACGTCCTGTCCAAGAACCAGGCCAGCTGCCCAGTATGCAAGAGCCCCTGTGAGTACCAGTGCCAGTCGTGCAACAAATTCTACAAGTGCCTGGAGCACCTGAACAACCACGTGTGCATGGTACTGGTCAAGACGAAGCCGCCCTCGTGCACCCAGTGCGGCAGCACCTTCTCCTCGATGTCGTCGCTGCGCAGCCACATGCGCGTCAAGCACATCCGGGACAGCAAACAGGCGAAGAAGCACGTCTGCTCCAGGTGCAACACCGTGTTCAGCCGACTGAGCGGCCTGCGCACTCACGAGCAGGTGGTGTGCGGCAAGAGCAAGCAATTCAGCTGCGACCTTTGTCCCTTCGTCACGGGCTACAGCAGCTGCCTCAGGAAGCACCGCACCAGGAAGCACGGCCAGAGCCCCGACGGCCAGAACTGCTTCGTCTGCACCAAGTGCGGCAGGGCCTACAAGACTCCGGGACACTTCCAGAAGCACTTCGAACTGGTCTGCCTCAAAGAGTACGCCTGCGAGCACTGCGACTGCAAGACTAGCAGCAGGCTGCTGTTCCACCAGCATCTCGCCATCGCCCACCCCGACGTGCTGGGAAAGAGGAAGTCGCAGCGGCACAGGAGACACGTCGatcgatga
Protein Sequence: MKLDDRLSLRQHRLHQCVKSSTLYKCEHCNFLTVHKGDLPRHLERKHGERENLPCPNCGKKYKGDFNLQQHLKRDCNVVKRFTCAHCSNGHVTPKKKSINGAKKLSEELCTDKGIQTTNGKIKERGAERYTCPPELILLHCPKCQDSFEKPPRKKVSSCTRCDSPFLLQCSKCRKIFRKYMTLYCHIKAICGNRNPEAEPKDGRVACSDCGTKFCSYENLRRHKRLTCQKQAAYKCTSCSFVSRYKASLELHVRGQHLGNGTEEVHRCGWCGKGFSHSQTLKRHETYICGKEKNFFCGHCDYKCYLKYQLKKHMRAKHKRLFTKGETFPRLSGGIYIKEEITIESQSSSADVQTESFTEEKSHPSDSFIYISDSTADEDSNTGNGSGNNIHQDAPNSEVDIDEHQDIIHIKEEIISDDELLCYSPINFEEIHEDFEVTEESVDKFSFEKIGTVPNPITTIPADVNDESIITLVNESIFTPMNESVMIQTEESKRIEEPKAGGSHEAVVVPAHTLIRRQWAYNPRRPSGQLKSVLHCPSCKDDPRHVLSKNQASCPVCKSPCEYQCQSCNKFYKCLEHLNNHVCMVLVKTKPPSCTQCGSTFSSMSSLRSHMRVKHIRDSKQAKKHVCSRCNTVFSRLSGLRTHEQVVCGKSKQFSCDLCPFVTGYSSCLRKHRTRKHGQSPDGQNCFVCTKCGRAYKTPGHFQKHFELVCLKEYACEHCDCKTSSRLLFHQHLAIAHPDVLGKRKSQRHRRHVDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01381603;
90% Identity: iTF_01381603;
80% Identity: -