Basic Information

Insect: Sycophila texana
Gene Symbol: gtf3a
Assembly: GCA_035582955.1
Location: JAWWEN010000038.1:12318098-12323278[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0029 0.33 12.3 1.5 1 23 629 651 629 651 0.97

2 16 4.5 5.2e+02 2.3 3.0 1 19 657 675 657 676 0.89

3 16 1.4 1.7e+02 3.8 1.1 3 23 685 705 684 705 0.97

4 16 0.00051 0.059 14.6 1.9 3 23 714 735 713 735 0.96

5 16 0.0042 0.49 11.8 1.4 1 23 742 765 742 765 0.96

6 16 0.00046 0.053 14.8 1.2 1 23 771 794 771 794 0.94

7 16 5.1e-07 5.9e-05 24.1 3.0 2 23 828 849 827 849 0.97

8 16 1.1e-05 0.0012 19.9 0.2 1 23 855 877 855 877 0.99

9 16 0.001 0.12 13.7 3.1 2 23 889 911 888 911 0.95

10 16 0.0089 1 10.8 0.9 1 23 917 940 917 940 0.95

11 16 0.047 5.4 8.5 3.2 2 23 962 984 961 984 0.93

12 16 0.0016 0.19 13.1 0.7 2 23 991 1013 990 1013 0.96

13 16 0.00021 0.024 15.9 2.5 2 23 1021 1042 1020 1042 0.96

14 16 0.0094 1.1 10.7 2.5 1 23 1048 1071 1048 1071 0.95

15 16 1.4 1.6e+02 3.8 4.1 2 23 1078 1099 1077 1099 0.96

16 16 0.0049 0.56 11.6 2.7 1 23 1105 1127 1105 1127 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0029	0.33	12.3	1.5	1	23	629	651	629	651	0.97
2	16	4.5	5.2e+02	2.3	3.0	1	19	657	675	657	676	0.89
3	16	1.4	1.7e+02	3.8	1.1	3	23	685	705	684	705	0.97
4	16	0.00051	0.059	14.6	1.9	3	23	714	735	713	735	0.96
5	16	0.0042	0.49	11.8	1.4	1	23	742	765	742	765	0.96
6	16	0.00046	0.053	14.8	1.2	1	23	771	794	771	794	0.94
7	16	5.1e-07	5.9e-05	24.1	3.0	2	23	828	849	827	849	0.97
8	16	1.1e-05	0.0012	19.9	0.2	1	23	855	877	855	877	0.99
9	16	0.001	0.12	13.7	3.1	2	23	889	911	888	911	0.95
10	16	0.0089	1	10.8	0.9	1	23	917	940	917	940	0.95
11	16	0.047	5.4	8.5	3.2	2	23	962	984	961	984	0.93
12	16	0.0016	0.19	13.1	0.7	2	23	991	1013	990	1013	0.96
13	16	0.00021	0.024	15.9	2.5	2	23	1021	1042	1020	1042	0.96
14	16	0.0094	1.1	10.7	2.5	1	23	1048	1071	1048	1071	0.95
15	16	1.4	1.6e+02	3.8	4.1	2	23	1078	1099	1077	1099	0.96
16	16	0.0049	0.56	11.6	2.7	1	23	1105	1127	1105	1127	0.98

Sequence Information

Coding Sequence: ATGAGCGTGCCGACAAAGACTCAACCAACGCCCTCTCTACATCAATTAGctcATAAAGATTCACCTACTAATGTTAAAGTGAAAGCATTAGAAAAAGCAATTACACCAAAGAATGTCGAGTTACTGGGTAAAACCAATTTGATTAGTAACTATTTAAAAGGAACAACATCAGATAGAATGGAGACTTTTAGaacaaCTCCTCGATTAAAACTACCAACAATTTTGACATCATCAACTGCAAAAAAGCCTTCAGTAGTACctgaagaaattaaacaaaagttgGAGAAGTATTGCCGAACATGTGCAGgtttaaaatttccattagTTAACATATTCAGTGAAAAAGGAGTTCAAATGAGGCTCAATCAGCAAATACAACATCTAGAAGATATTGATCAACACGATAGTTTATCAACGCAAATGTGCATGGACTGTATATGTGATATGAAAATGAGCTACAAATTCTTTATGCAAATAAAGAAAGCTGAAATGAAGTTAAAATCTATCTGTAATACACTAAATGAAAGCATGTCCAAATCAATTTCAGCTCAgaataatgatgaaaataaaaatcaaaatcaaaatgaagaaaaaattagtttatctCCAGTTGCAGACTTAGCAGATGTAAAAAGTAGTATTAatataatggaaaatttgGATGAAAAGAATTCTGTAGATGATTCTATAGATTATGACTGTGACACTGCAAATGATTCTTTCACTTGTGAAAATGATTCAATTGAAGAGTTTGATCCTCAAGATGTTAATGAAAGGGCTGccagtaaaaataagaattcagAACCATTTGAAAGTGAAGAATCAGAAGACTCAAAAAATACTGCTTACAAATATGATGAATCTTTAAATGCTTACAtaaaacttaaagaaaaagagaataatcaAAGTgatactgaaaataaaacaaaaacagaaGAAGTTAAAGATACAGAAAGTATGACAATCAAATTAGAATCTAGTAAATCATTGAGTCAACCAACAAAAGTAcccaacattttaaaaagaaaattgtcaaGTGGAAACATCAGTGATGAAAGTAATGACAGTAATAAAACACATGTttccaaattaaatattggtttaaaagatttaaaaattccaaaattaaatCTTCAAGATTCAACAATAAAGACTGAAGAAGACGGCGTTATGTATGTTACTGCAAAAGGATCTAAACCCAATGAAATGCTtttgataaaagtaaaaaagatggaTAAATCGTCTGAAAAGAAAGGAGACAAAGCTgttggaaagaaaaaagaatctacAGCAGTGCACAGAATATTTCCAAAGTATGATGGAAATAGTAGTAAAGGTAGCTTAATTGATGAACAGATAGaagtatacaaaaagaaaagggtgGAAATATTAGGTGAATCAGCTATTGTTTCAGAGATAGAAATGGAAGTGGAAGAACCAGAAATTAGAGTAGCAGGTGGGTTTGAAGTAGAGGacgattcagataaaaataaacaaagaaataaagaaaataagttgGATAGTGATAGAAAGAAGGAAGATTCCAGTTCAACAGATGGTAATGAAATTTCTGCATTAGAGCATTCTACAAATATGGATAAGTTAAAGCAACGCTGGagagacattaaaaaaacacacgACACTATTACTAAAGATTTATCAGAAGATTGTTCTGCCAGATTACGAACACTTCTAAGACAAAAAGATGAATACATAGCAGAATTTGTTAACTATTTAAAGCAGAGAAGAATTGTAGTATCGCGTCTAAAAGATGACGATGTAATCACATtatacgaaaagaaaaataatgtaactaTAGAGAGACCAGCTATAACAATTAAACAGGAGGTCCAAGAAATAGATCCTTTTTTATGCTTGAAAAGATACGAGTGTGACTTCTGTTTTAAATCATTTCCGGATAGAGATGAGATGTTTGAGCACTCAAAGTACCACGATTTTAGAATAATGCACTATTGTGAAGATTGTAagcaagaattttttactcaCAAAGCCAAACGCGCTCACAATCCCGACTGCTTACAAAAATTGCTTTGTAAGTACTGCGACGTAATGTTAGAAtcaaaaggaaagaaaagacaACACGAACAGAAGCACTGCGACGACGAACACGGTCAATTGTGCGACAAGTGTGGTGAAAAGTTCAAACATCAAGGTACCTTAGATCAGCACATTAAATTGCGACATTTGCAGTtggaaaaaatctttaaatgtcCTCAATGCCCAAAAAGATTCGCATTGAGAACGAAACTAACTTTTCACTTAAAATCTGTGCACACCACCAGTAGACCTTTTCTCTGCGAAGACTGCGGATCGGACTTCAAAAACCCCGCAAGCTTAAGGCATCACAGAATACGGAAGCACCAACCGACAAACAGCAAAAAGGAATGTACAGTCTGTCACAAGATGATTCCGGTCTACAGTATGTCGAAGCATATGCACACGCACAAATCGTACTCCATCAAATGTCCTCACTGCGacaaaatgttcaaaaacACCTCTACTTTGAAACAGCACTTGCGAATCCACGAGGACCAACGGCAGTACAAGTGCGACATGTGCGGAGTCGGCTTCAACAGGCGCGATGGCCTGAGGTTGCATCTAAAAGTCCACGAGAAGACCGACAGTCGAGGTCTAAAGGAGTGCTCGTGTCAGGTCTGTGGCGAGAAGTTTCCCAACCACTCGACCCTCGTCATCCACCGAAACCGCACACACAAGGACGGGCGCAACTACACGTGTCACATATGCAACAGGTCCATGATATCCACGCGTTCGCTCGAATGGCACTTGTCGAACATCCACAACGAGCCGATGCCCGGCCTCGTGAAGGATGAATCGAGCGTCGACGCCGAGACGAAGCGTGTCTCCTGCTTCCACTGCAACAAGACCTTCAAAACCGAGATGATCCTGCGGACGCACGTTAAGAATACGCACACACAGAAGGAGCCAGTCAAATGCCTGGACTGCGACTTGATGTTCACGTCGGACGTGAGACTGAAGCACCACATGATGGTGGAGCACAATCGATTAGAGGGTACCCTGTCCTGTCCTCATTGCACTAAACGCTTTGTTAATCAGCTCAGACTGAAGACGCACATGATCTCGCACTCGGACGAGCGGCCGCACACCTGCGACCTGTGCGGTTTCATGCTCAAGACGAAGATACAGTTGATCAAGCACAAGCAGAACAGACACAGCAACGAGAGACCGCTGCAATGCAGGTACTGTTCCTGGAGATGCAAGCAGGTGAGTGCGCTCGTCTGTCACGAAAGGACACACACGAATGAGCGACCCTACAGCTGCAGCGTCTGCAAGCAAAGATTCAAGTATCTGGGTGATAAAAACAAGCACGAGAGACGCCATGAAAGTCTTGGGGGTGCAGGCTTCAAGAGAATCGTCACTGGCAGAAACACAAACAAGAGTATTAAGAGGAGAGAAGAGAGCAACTCGACGGAGATGGATTCGGAAGCCGAACGCGAAACCAACGATAAAGAAGGAGAGGGCGAGGAGCAGGTAGAACACGAAGAGATCGAGAGTTTCGACGAACCGAAAATAGTCAAATTCGAATCGAATGAATTAATCGCTCACAGCGCTGAGGGCTTTCAGCAGatttacGTGGAGGAAGCAACGACTGATCTGGGTGTGGATGAGACGACTGTTTACACCGAAGAAGTTACGGCTGGTTATGCTAAGCAGGAAGTCATAGCCGGTATAATAGACGAACAAATGTTACAACCAGGTACGGTTGTACATATCGAGCAGGAAGacgaaaatggaaaaattcaaGTTATACCCGTGATGCTGTCCCTGCCAGATTTAACAGATGGTACGGCTGAAGTAAATTTAGCGACGGCGTCGATAATGTACAGTACCTAG
Protein Sequence: MSVPTKTQPTPSLHQLAHKDSPTNVKVKALEKAITPKNVELLGKTNLISNYLKGTTSDRMETFRTTPRLKLPTILTSSTAKKPSVVPEEIKQKLEKYCRTCAGLKFPLVNIFSEKGVQMRLNQQIQHLEDIDQHDSLSTQMCMDCICDMKMSYKFFMQIKKAEMKLKSICNTLNESMSKSISAQNNDENKNQNQNEEKISLSPVADLADVKSSINIMENLDEKNSVDDSIDYDCDTANDSFTCENDSIEEFDPQDVNERAASKNKNSEPFESEESEDSKNTAYKYDESLNAYIKLKEKENNQSDTENKTKTEEVKDTESMTIKLESSKSLSQPTKVPNILKRKLSSGNISDESNDSNKTHVSKLNIGLKDLKIPKLNLQDSTIKTEEDGVMYVTAKGSKPNEMLLIKVKKMDKSSEKKGDKAVGKKKESTAVHRIFPKYDGNSSKGSLIDEQIEVYKKKRVEILGESAIVSEIEMEVEEPEIRVAGGFEVEDDSDKNKQRNKENKLDSDRKKEDSSSTDGNEISALEHSTNMDKLKQRWRDIKKTHDTITKDLSEDCSARLRTLLRQKDEYIAEFVNYLKQRRIVVSRLKDDDVITLYEKKNNVTIERPAITIKQEVQEIDPFLCLKRYECDFCFKSFPDRDEMFEHSKYHDFRIMHYCEDCKQEFFTHKAKRAHNPDCLQKLLCKYCDVMLESKGKKRQHEQKHCDDEHGQLCDKCGEKFKHQGTLDQHIKLRHLQLEKIFKCPQCPKRFALRTKLTFHLKSVHTTSRPFLCEDCGSDFKNPASLRHHRIRKHQPTNSKKECTVCHKMIPVYSMSKHMHTHKSYSIKCPHCDKMFKNTSTLKQHLRIHEDQRQYKCDMCGVGFNRRDGLRLHLKVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRTHKDGRNYTCHICNRSMISTRSLEWHLSNIHNEPMPGLVKDESSVDAETKRVSCFHCNKTFKTEMILRTHVKNTHTQKEPVKCLDCDLMFTSDVRLKHHMMVEHNRLEGTLSCPHCTKRFVNQLRLKTHMISHSDERPHTCDLCGFMLKTKIQLIKHKQNRHSNERPLQCRYCSWRCKQVSALVCHERTHTNERPYSCSVCKQRFKYLGDKNKHERRHESLGGAGFKRIVTGRNTNKSIKRREESNSTEMDSEAERETNDKEGEGEEQVEHEEIESFDEPKIVKFESNELIAHSAEGFQQIYVEEATTDLGVDETTVYTEEVTAGYAKQEVIAGIIDEQMLQPGTVVHIEQEDENGKIQVIPVMLSLPDLTDGTAEVNLATASIMYST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01380817; iTF_00714615; iTF_00713160;
90% Identity: iTF_01380817;
80% Identity: -