Stex002546.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sycophila texana
Gene Symbol
-
Assembly
GCA_035582955.1
Location
JAWWEN010000009.1:12074606-12084063[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.12 14 7.2 3.4 1 23 435 457 435 457 0.98
2 15 6.6e-05 0.0077 17.4 0.4 2 23 493 514 492 514 0.95
3 15 0.00064 0.074 14.3 3.5 1 23 520 542 520 542 0.99
4 15 0.00063 0.073 14.4 0.1 3 23 550 571 548 571 0.93
5 15 0.0051 0.59 11.5 0.3 1 23 592 614 592 614 0.98
6 15 0.00012 0.014 16.6 2.0 1 23 620 642 620 642 0.97
7 15 6.9e-07 7.9e-05 23.7 2.1 1 23 647 669 647 669 0.96
8 15 0.37 43 5.7 1.4 1 20 1004 1023 1004 1026 0.89
9 15 0.11 12 7.4 0.8 1 23 1050 1072 1050 1072 0.97
10 15 0.00026 0.03 15.6 0.3 2 23 1079 1100 1078 1100 0.96
11 15 0.019 2.1 9.7 2.0 1 23 1106 1129 1106 1129 0.95
12 15 0.00033 0.038 15.2 1.8 1 23 1133 1155 1133 1155 0.96
13 15 0.016 1.9 9.9 1.2 1 23 1160 1182 1160 1182 0.98
14 15 1.2e-07 1.3e-05 26.1 0.7 1 23 1188 1210 1188 1210 0.98
15 15 0.014 1.6 10.2 0.3 1 17 1215 1231 1215 1232 0.92

Sequence Information

Coding Sequence
ATGGAGCTGAAGGAAGATGAGGGCCAGGTTTGCAGGCTCTGCGGCCAGTGCGGAAGTATCTACATGGACGTCTTCGGCGAGGAGGGCACAAAACGCTTCCTTGGCTTCAAGATACACTCGAAAATCAACATACTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGCGTTCAATGTCTGGGCAAACTTGAATTTGTTTGCGACTTCCAAGAGGAGTGTCTACGTACCCAGCAACTGTTACGCGATCAATACAATCTACCATCTTTGACAGATATTGAGGAAAATAAACCTGAAGATTCAGCTCCAAGCACTTCAACAACAAGtactgaaaataatgtaatcaacaataaagaaaatactgcTGAGAACAGTATAAACAATGATAATTCAATTGAtagtaatatcaataataacaacaacaataatagtaataaaaattataatcctCCGGAAAATGAATTATCTAAAGATGATAGTAGAGCTGCTAGAAATACTACTAAGTTGCAAAGAAATCTCAGAAGTCaacaaaatcaattgaaaactgttataaaaaaagattctcagaaatcagaaatttttaatagtgaagaagatgtaataattaatatacaacaACCAGAATTATCAACAACTACGAAACGTAAGCTTCGAAGTAGACAAAGTATTGAAGGACAAGTGCCTAATAATGAAGTATCAGAAATAGATACTAATTCTAAAGTCTTAAAAAGTGCctctgcaacaaaaaaaagactgaAAAAACACAATATTTCTATAGACACTACTATAAATTCTAATGATACTCCAAATCAAATTGTGGGAAAGAAGAATGAACAAGTTGAGATCATTAATACAATTCAAATACCCACTAATACCTTGAATAAAGTATTGTCTGCTATAACAAATGCGCCTGGTATAGGTGTTTCTGTGAAGGAACCTATAAATCGCAGTAGTGATGCCGAAGACATAAGTTTTACTGTTGAATTGTGCAAAAAACAAGAAACAGATTCTTTAACTGTGGTAGCCAAAGTTTTTCCAGATCAAGGTTCTTGTTTAGTTGATAAATCAATTGTTACATTCCTAGAAGAAGGAACTAATGAGGAGGTAAACACCCTTGTTAACAATATTGTTAGTCCAAATACTCCAAAAGATAAGAGTCGCagtttaattgataaattacaaaatgcaGAAGATATTGCTAGTAATTCCAGAAATCCTgaagaactttttaaaatggatGGAGAAGAAATTCATGTTGATGATAATGTTGAACAGATCACTGTGAATGATAATCAAGTAAGTTATGCTTGCAAATTGTGTCGGAAAATATATGAACGTAAAGACAAATGCACTGTTCATGTAAAAACACATCTAGGCATAAAACAATATATGTGCATTTTATGCCAAGctaaatttgtttgtaaatctGATGTTATGAAGCACATAAGATGCTCGCACACAAATCCTAGGCCTATTTCCTGTCCCAAGTGCCCAAAAAGATTCAGATCTAAATTTGATCTGGCAGAGCACAATAATGTGCACAAAGGAGTAAAACCATATCAATGCGCAGACTGCGATCAAAGTTATCATCACAAAGTATCATTACAAATGCATGTTAAATCACATATGCCTCCTCAAAATTTAGCCTGTGAATATTGTGGAAAAGTTTTTCCTTATCGCACGAGATTGCTCAGTCACATTGGTAGTGTGCACATGAAAGACAAACCTTCCAAGTATAAAGCTCATGTACTTCAGCACAGTAATCCAAAACCGTTTGTttgtgaaatttgtaaaaacagATACGCATCAAAAGCATTTTTGAATGAGCATGTACTGAAGCATCAAGGAGTAAGAAAACATGTATGCCAAAAATGTGGAGCTTCATTTGGACAAGCAAGTCACTTAGCTGCTCATCGTCATGTTCATGGAGAAAAAAGTCATGCTTGTCCAGAGTgtggaaaaatgtttaatcgtCGAGATAATATGAAAGTTCACAGAAGAAGACATTTGATTCCTGATATAAAGCCTGATGATGGTCTACCTCAAGTAATTTGCATGCGATGTCTGGGAACTATTGAATTCTGGTGTGATTTTCGTAACATGTGTCATGATACTCAAAAAAATCTGGAAACAATAAATGGGGAAAATGTTAATGATAAAGATGCGCCTACAGAAAAACTGGAAAGTGACACTGAATctgataaagaaaatgttttaccAGTTAAAAATGGAAAGCGAAAAGGAAAAGTATTGCATCCAGAAGAAACAAAACTTACAAAAACTATTGAAACTGATGAAAACACAAATTTAGAAGAAGAATCTGCTATTTCAAATGAATCCCCGTATAAGGAGAAAAATACAGATGAAGAAAACTTGAATCCAAATCATActaaagagatttttaattcaaatgctAATGACGAAATGcaagaaaatatcatttttgaAGGAACTGTAATTGATTCTGCTGGTGATTCTTCAATTGTGATGCCTTTAAAAATGGAAACTTCTAATTCTATAAAACTTGATAATGTTGTAATGGCCGATGGTAATGAAATAGTGCAAGCTGAAGAAATCGTTTGGATCTCAAGTAATCCTCAATTACCTGAGCCTGAAAAAcctaaatcaattaaaaatcaatctaaGATTGCTAGTCCAGCCCCAGGAGATGAAGCCGAGGCTGTAGAAAAAGATGGAACAATATTGATACAAACTTCAGGACATGATGTAAATTCAGCAAGCTCTACAGAACAATTAATTGTGCTTGAAGTACAATTACCTGCCAAAGATAACTGTGttgcattacaaaaaaatgttgcattactCAAAAGAAATCGTTCTTTATCTCTTGCCAGTTCACGAAGATCTAGTGAAGGgaaatatgcaaaaatatcAGAATTAATGAccgaagaacaaaaaaatgaaattgagactcactataaaatagaaatgtcACTTGTTGATGATGCAAAAGTTGCAGAGAATGTAATTATTCTAGATAAATCTAAATATCAATGCAAAATATGTCAAGTAACTTATCCAAGACTTGATAAGTGTCAAgTACACATCTGGCGACATTTGGACATGAAaccatttttatCTACATTACTTGAAGAGCATCTTAACATACACACGGGAACGCGACCCTTTCAATGTGACTTTTGTGATTTTGCGAGTACAAGTAAACAAATTCTTGCACATCACATTTTGATTCACAAAGAAGTGAAAGACGTTAAATGTGATATCTGTGGAAAagcattttattcaaaaggtAGAATGCGCGCTCATAAAGTTACTCACAACAAGGATCAAGCATTTAAATGTACTCTATGTTCTACTTATTTGTCACACAAAGAAGCTCTTGAAAAACATTATGAAAACGTTCACAAAAAAGAttacatttgcaaaatttgcaGCAAAGTTTATAAATCAAGAAAAGCTTTACACAATCACGAAAGCgTTCATTCTGCTGCTAAATTTAAATGCCCAATGTGTccaaatgtttataaaagtaCGCATATATTAAAAGAACATATTTTGAAACACCAGGGAATTAGACAATATAAGTGCAATAGCTGCGATAAATCTTTTGCTCAACAATCTCATCTAGCAGCTCATATGGCAGTTCACAGTAATATAACgTACAATTGCCCTGGCTGTCAAAAAGGATTCAATCGTCATGACAATATGAAATTGGGATATAACTACCTTCAGAGAAAGTCGCTTGGCCTAAATTTCACCGGTCAGAAAATTGAGCTGCTGAGGATTGTCGCAGGTTGA
Protein Sequence
MELKEDEGQVCRLCGQCGSIYMDVFGEEGTKRFLGFKIHSKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQLLRDQYNLPSLTDIEENKPEDSAPSTSTTSTENNVINNKENTAENSINNDNSIDSNINNNNNNNSNKNYNPPENELSKDDSRAARNTTKLQRNLRSQQNQLKTVIKKDSQKSEIFNSEEDVIINIQQPELSTTTKRKLRSRQSIEGQVPNNEVSEIDTNSKVLKSASATKKRLKKHNISIDTTINSNDTPNQIVGKKNEQVEIINTIQIPTNTLNKVLSAITNAPGIGVSVKEPINRSSDAEDISFTVELCKKQETDSLTVVAKVFPDQGSCLVDKSIVTFLEEGTNEEVNTLVNNIVSPNTPKDKSRSLIDKLQNAEDIASNSRNPEELFKMDGEEIHVDDNVEQITVNDNQVSYACKLCRKIYERKDKCTVHVKTHLGIKQYMCILCQAKFVCKSDVMKHIRCSHTNPRPISCPKCPKRFRSKFDLAEHNNVHKGVKPYQCADCDQSYHHKVSLQMHVKSHMPPQNLACEYCGKVFPYRTRLLSHIGSVHMKDKPSKYKAHVLQHSNPKPFVCEICKNRYASKAFLNEHVLKHQGVRKHVCQKCGASFGQASHLAAHRHVHGEKSHACPECGKMFNRRDNMKVHRRRHLIPDIKPDDGLPQVICMRCLGTIEFWCDFRNMCHDTQKNLETINGENVNDKDAPTEKLESDTESDKENVLPVKNGKRKGKVLHPEETKLTKTIETDENTNLEEESAISNESPYKEKNTDEENLNPNHTKEIFNSNANDEMQENIIFEGTVIDSAGDSSIVMPLKMETSNSIKLDNVVMADGNEIVQAEEIVWISSNPQLPEPEKPKSIKNQSKIASPAPGDEAEAVEKDGTILIQTSGHDVNSASSTEQLIVLEVQLPAKDNCVALQKNVALLKRNRSLSLASSRRSSEGKYAKISELMTEEQKNEIETHYKIEMSLVDDAKVAENVIILDKSKYQCKICQVTYPRLDKCQVHIWRHLDMKPFLSTLLEEHLNIHTGTRPFQCDFCDFASTSKQILAHHILIHKEVKDVKCDICGKAFYSKGRMRAHKVTHNKDQAFKCTLCSTYLSHKEALEKHYENVHKKDYICKICSKVYKSRKALHNHESVHSAAKFKCPMCPNVYKSTHILKEHILKHQGIRQYKCNSCDKSFAQQSHLAAHMAVHSNITYNCPGCQKGFNRHDNMKLGYNYLQRKSLGLNFTGQKIELLRIVAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00714663;
90% Identity
iTF_01380804;
80% Identity
-