Stex010347.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010002362.1:692-1681[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-09 6.7e-06 26.5 0.0 2 41 16 55 15 60 0.88 2 2 4.4e-10 6.2e-07 29.9 0.0 1 42 166 207 166 210 0.90
Sequence Information
- Coding Sequence
- ATGTCAAAGAATTACGTGAGAAAAACAGATCGAGGTAGATGGTCGCAAGAAAATTTGACTTTAGCTATCAAAGCTGTGAAAGAAGGtctgtgcaataaaaaatttgctagtaCAAAATATGGGATACCTCGTACTACTTTGGCACGTCACTTAAAATTAGGTATCAATGAAAAGAAGCGACAAGGGAGAATTCCAGTTTTAAGCAAATGTGAAAAAGAATTGGAAGAATTTCTCATAAACTTACAAAGTCAAGGAATAATATGGACTTCAGCTGAATtaagaagattaattttagaatttatagaACAGCGCAATGTGAAATTTGGCCACAATATTACAAAGAAGTTAATTAGTAACAAGTGGATtagttcatttatttgtaatcatccaaatttaaatatagaaataaataacaaagatgttatggttgaaaaaaaagtaaaatcaaaagtaaaacATGATGATCACATACAAAACACAGATCGATGCCGATGGACTGAGAAGCAATTAATTCAAGCTATAGATTCTGTAAATAATGGAGTTTGTAGTCACAGAGCTGCTAGTAAAATGTTTGGAATACCTAGAACTACATTAATAAGACACATCAAAGaaggaacaaaagaaaaaaaacgtttggGTCGAATGCCAATTTTTGGAgaacttgaaaaagatttatcaaaaattctgCTTAAAGAGCAGAGtataaaaaacagtttatCCATGACACAGCTCAGGAGAATCGCatttaattttgcagaaaCTCATCAGATTAAAcacaaatttaacaaaaataaaggttTAGCAAGTTATGAGTGGGTTCATGCATTTACAAATAGGCATCCTGAAATAACTGtgcaaaaaaacaattcatcCAAAGTCTAtgaattaagttatttaagcGAATTTAGTGATatgttacaaataattttagaagaaGGAGATGCATTTGATTTGAACTCTGTTTACACGAATGATAAGtgtgatttataa
- Protein Sequence
- MSKNYVRKTDRGRWSQENLTLAIKAVKEGLCNKKFASTKYGIPRTTLARHLKLGINEKKRQGRIPVLSKCEKELEEFLINLQSQGIIWTSAELRRLILEFIEQRNVKFGHNITKKLISNKWISSFICNHPNLNIEINNKDVMVEKKVKSKVKHDDHIQNTDRCRWTEKQLIQAIDSVNNGVCSHRAASKMFGIPRTTLIRHIKEGTKEKKRLGRMPIFGELEKDLSKILLKEQSIKNSLSMTQLRRIAFNFAETHQIKHKFNKNKGLASYEWVHAFTNRHPEITVQKNNSSKVYELSYLSEFSDMLQIILEEGDAFDLNSVYTNDKCDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00712762;
- 90% Identity
- iTF_01380519;
- 80% Identity
- -