Basic Information

Insect: Sycophila texana
Gene Symbol: bab1
Assembly: GCA_035582955.1
Location: JAWWEN010000001.1:10551787-10554071[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 6.4e-07 0.0009 19.7 0.0 1 38 216 253 216 259 0.88

2 4 3.8e-12 5.3e-09 36.5 0.0 3 41 268 306 266 310 0.85

3 4 0.00048 0.67 10.5 0.0 7 34 324 350 320 355 0.88

4 4 2.5e-11 3.5e-08 33.8 0.1 4 38 382 416 379 420 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	6.4e-07	0.0009	19.7	0.0	1	38	216	253	216	259	0.88
2	4	3.8e-12	5.3e-09	36.5	0.0	3	41	268	306	266	310	0.85
3	4	0.00048	0.67	10.5	0.0	7	34	324	350	320	355	0.88
4	4	2.5e-11	3.5e-08	33.8	0.1	4	38	382	416	379	420	0.94

Sequence Information

Coding Sequence: ATGTCCGAATCGGGAACGCAGCCGGCGGCGGGAGGCGGCGATCACTCGCAGATCAACACGTCCTACTGCTTCAGATGGAGCAATTACCAGAGTCACCTGTCCGAGGTGGTGCGCCAGCTCCTGGAGGAGGAGTGCATGGTCGACGTGACCCTCTACGCCGGGGGCGAGCGCATCCAGGCCCACCGGCTCGTCCTCTGCGCCTGCAGCAGCCTCTTCCAGGAAATTTTGAGCCAGGTTAACGAAGAGCATCCTACTATAATCTTGAGTGATATATCACCACAGGATGTGAGATCTATCGTGGAATTCAGTTACAATGGAGAAGTTAGAATACctgttgaaaatataaacaatttactgGAAGCAGCACATTCATTGAAGATATGTGGCTTAATGGAAatcGATGGACTTGATGAGTTTGAGATGAATAATGATAAAGATGCCAGTCTGGAGGAAACGTATATACTCAACGAATTAACCCATGCGGATGAAGAAGAAATagaattgtttgaaaaatcaaatgaagAGAATGTGAATGTTGTTAATAAACagaggaaaaggaaaaatacaTGTACAGATGAGGATATTGAAGTTAGTCCTGGATTGAAGCCTAGAAGGCAAAGAAAAAGTGTTTGTAAGAAAGATTATACTGACGAACAATTGGCTAATGCAATTGCTGATATAAAAGCTGGAAAATCATTATTAGAAGCAGCACAGCATAATCACATTCCCAGATCTACACTTTACATGCGAGCAAAGACATTAAAACTTCCCTTGAACCCTACTAGAAATGAATATACATTAGATGATATGAAAGGAGCTATTCAGATGGTTCTTTcTGGATCCAGCTTGCAGCAAGCTGCAGATTGTCATGGAATACCGAAAACTGTTTTGTGGAGGAGAATTCAGAAAGAAGGCTATCAAACTCCAAGAACTGATAACAGGAAAAGTTATGGAgcagaaaaaagagaagctgCAGTAAGAGCTTTACAAAGAGGAGAAGCTCTTACAAAAGTTGCGAATGAATATCAAatACCAAAAACTACCCTATTTAGAGATAAAATTCGTTTGGTAGATGAAGGAAAGCTGCCTTCAAcagtttggaaaaaaagaagagttgAAGGGGAAGATTATAGAAAGCGATATCGTCTTGAAGAGGCAGTAGCTGCTTGCAAAGATGGTAAAATGTCTCAAGCTGCTGCTTCTGCAACTTATCAGATTCCTAAAACTACTATTTGGAGGCGACTACAAAAAGATGGTAAACCAGATGGTTCCGAATCACCTACTAAAAAACAGCAACATAAAAACTCTAAAGCAGCTGAACCTTTGAAATCAGAAGAGTTAAATGACGCTGATTTTGAAGACTACTGTCCGGATGAGGCAGAAATGAGTGTAACTTATATAGATGAAAGTCAAGATATGTCGGAGGATCCCATAATAATTCTTGCAAGTGGTGATGTGggtgatttaaatataacaaataatagaTCACTAGTAGTTGTTCAAGATGGAAATGATGACAATTTCATATCATGTGGACTAGAATTGGATGAAAATTctacatttacaaaaagttaa
Protein Sequence: MSESGTQPAAGGGDHSQINTSYCFRWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSSLFQEILSQVNEEHPTIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLEAAHSLKICGLMEIDGLDEFEMNNDKDASLEETYILNELTHADEEEIELFEKSNEENVNVVNKQRKRKNTCTDEDIEVSPGLKPRRQRKSVCKKDYTDEQLANAIADIKAGKSLLEAAQHNHIPRSTLYMRAKTLKLPLNPTRNEYTLDDMKGAIQMVLSGSSLQQAADCHGIPKTVLWRRIQKEGYQTPRTDNRKSYGAEKREAAVRALQRGEALTKVANEYQIPKTTLFRDKIRLVDEGKLPSTVWKKRRVEGEDYRKRYRLEEAVAACKDGKMSQAAASATYQIPKTTIWRRLQKDGKPDGSESPTKKQQHKNSKAAEPLKSEELNDADFEDYCPDEAEMSVTYIDESQDMSEDPIIILASGDVGDLNITNNRSLVVVQDGNDDNFISCGLELDENSTFTKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00713758;
90% Identity: iTF_01380518;
80% Identity: iTF_01381451;