Sque000665.1
Basic Information
- Insect
- Sycophila quercilanae
- Gene Symbol
- bab1
- Assembly
- GCA_035582995.1
- Location
- JAWWEP010000001.1:8297907-8300183[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.6e-07 0.00085 19.7 0.0 1 38 216 253 216 259 0.88 2 4 3.3e-12 5e-09 36.5 0.0 3 41 268 306 266 310 0.85 3 4 0.00041 0.63 10.5 0.0 7 34 324 350 320 355 0.88 4 4 2.2e-11 3.3e-08 33.8 0.1 4 38 382 416 379 420 0.94
Sequence Information
- Coding Sequence
- ATGTCCGAATCGGGAACGCAGCCGGCGGCGGGAGGCGGCGATCACTCGCAGATCAACACATCCTACTGCTTCAGATGGAGCAATTACCAGAGTCATCTGTCCGAGGTGGTGCGCCAGCTCCTGGAGGAGGAGTGCATGGTCGACGTGACTCTCTACGCCGGGGGCGAGCGCATCCAGGCCCACCGGCTCGTCCTCTGCGCCTGCAGCAGCCTCTTCCAGGAAATTTTGAGCCAGGTTAACGAAGAGCATCCTACTATAATCTTGAGTGATATATCACCACAGGATGTGAGATCTATCGTGGAATTCAGTTACAATGGAGAAGTTAGAATAcctgttgaaaatataaacaatttactgGAAGCAGCACATTCATTGAAGATATGTGGCTTAATGGAAatcGATGGACTTGATGAGTTTGAGATGAATAATGATAAAGATGCCAGTCTGGAGGAAACATATATACTCAATGAATTAACCCATGCGGATGAAGAAGAAATagaattgtttgaaaaatcaaatgaagAGAATGTGAATGTTGTTAATAAacagaggaaaagaaaaaatacatgtaCAGATGAGGATATTGAAGTTAGTCCTGGATTGAAGCCTAGAAGGCAAAGAAAAAGTGTTTGTAAGAAAGATTATACTGATGAACAATTGGCTAATGCAATTGCTGATATAAAAGCTGGAAAATCATTATTAGAAGCAGCACAGCATAATCACATTCCCAGATCTACACTTTACATGCGAGCAAAGACATTAAAACTTCCCTTGAACCCTACTAGAAATGAATATACATTAGATGATATGAAAGGAGCTATTCAGATGGTTCTTTcTGGATCCAGCTTGCAGCAAGCTGCAGATTGTCATGGAATACCAAAAACTGTTTTGTGGAGGAGAATTCAGAAAGAAGGCTATCAAACTCCAAGAACTGATAACAGGAAAAGTTATGGAgcagaaaaaagagaagctgCAGTAAGAGCTTTACAAAGAGGAGAAGCTCTTACAAAAGTTGCGAATGAATATCAAatACCAAAAACTACCCTATTTAGAGATAAAATTCGTTTGGTAGATGAAGGAAAGCTGCCTTCAAcagtttggaaaaaaagaagagttgAAGGGGAAGATTATAGAAAGCGATATCGTCTTGAAGAGGCAGTAGCTGCTTGCAAAGATGGTAAAATGTCTCAAGCTGCTGCTTCTGCAACTTATCAGATACCTAAAACTACTATTTGGAGGCGACTACAAAAAGATGGTAAACCAGATGGTTCCGAATCACCTACTAAAAAACAGCAACATAAAAACTCTAAAGCAGCTGAACCTTTGAAATCAGAAGAGTTAAATGACGCTGATTTTGAAGACTACTGTCCGGATGAGGCAGAAATGAGTGTAACTTATATAGATGAAAGTCAAGATATGTCGGAGGATCCCATAATAATTCTTGCAAGTGGTGATGTGGgtgatttaaatataacaaataatagaTCACTAGTAGTTGTTCAAGATGGAAATGATGACAATTTCATATCATGTGGACTAGAATTGGATGAAAGTTctacatttacaaaaagttaa
- Protein Sequence
- MSESGTQPAAGGGDHSQINTSYCFRWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSSLFQEILSQVNEEHPTIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLEAAHSLKICGLMEIDGLDEFEMNNDKDASLEETYILNELTHADEEEIELFEKSNEENVNVVNKQRKRKNTCTDEDIEVSPGLKPRRQRKSVCKKDYTDEQLANAIADIKAGKSLLEAAQHNHIPRSTLYMRAKTLKLPLNPTRNEYTLDDMKGAIQMVLSGSSLQQAADCHGIPKTVLWRRIQKEGYQTPRTDNRKSYGAEKREAAVRALQRGEALTKVANEYQIPKTTLFRDKIRLVDEGKLPSTVWKKRRVEGEDYRKRYRLEEAVAACKDGKMSQAAASATYQIPKTTIWRRLQKDGKPDGSESPTKKQQHKNSKAAEPLKSEELNDADFEDYCPDEAEMSVTYIDESQDMSEDPIIILASGDVGDLNITNNRSLVVVQDGNDDNFISCGLELDESSTFTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00713758;
- 90% Identity
- iTF_01380715; iTF_01381451; iTF_01381236;
- 80% Identity
- iTF_01380715;