Stex004134.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- retn
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010000020.1:6818232-6856380[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-26 1.6e-22 80.5 0.0 2 89 58 143 57 143 0.96 2 2 1.5 5.3e+03 -1.3 0.0 30 51 204 227 189 251 0.75
Sequence Information
- Coding Sequence
- ATGATGTTTCCAAAGGAGTCGTCGCTGCTTGAAAATTCGTACCAGAGCTCGGAAAACTGGGAAGATGAAGAGCTCAGCAAGAGCGGAAGCACAAATGGGAAAAGCAGTAGCTTCAGTGATTCTTCAATGAGTCTCTTAAAtaagCTGTACGAAATAAACGATGACCCCAAGAGGAAGGAGTTTCTGGATGACCTGTTCAGCTACATGCAGAAAAGAGGTACACCGATAAACCGGCTGCCGATCATGGCGAAGTCGGTGCTCGACCTCTACGAGCTGTACAATCTGGTGATCGCCCGAGGAGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAAATCATCAAGGGTCTTCACCTCCCGTCGAGCATAACGTCGGCAGCCTTCACACTGCGCACCCAGTACATGAAATACTTGTACCCATACGAGTGCGAGAAGAAGCAGCTGTCGACGCCGGCAGAACTGCAGGCAGCGATCGACGGCAACCGGCGGGAGGGCCGTCGCAGCAACTACGGCGCGTACGGAGGAGGCGGCGGCACCGGCGGTGGCGACAGCCTCGTCCACCAGCGCAGTCCCCACAGCCAGAGCAGCCTGGCCTCGCTCCACGGCCAGATCAACCCCATATCGCTGGTGACGGCAGTGCAGGCTGCAGCCGCGGGCGGCCAGCACCAGGTGCCCAACCCCCAGAACCTCGTCAACGGCAGTGCGGCGCACACACCCCTACCACAGCACCCACACCACCCACATCTCCAGGCCAGCTTCGGAGGCACCCCCAATGCAGGAGGCATAGCGCCGGAGTTCGAGGTGCGCATGGCGGCGGAGTACTTGAAGCAGTGGCAGCGCGACTTGGGCAGACGCGCGGCCGGCTCCCCGACGAACCTGATGAATCACCGGCAGGGCAGCGACTCGCCGCCCCCGCGCTCGCCGTCGCGCGAGGCCGCCCTCTTCGAGATGTCCAGATTCACCCTCTGGAACATGTACAACAACAATTTGCACCCGGGCCTCGGATACCCCCAGGCCGTGTCGCCGCAGCCGAGCTCGCACTCGCCTCAGGGTCACCCAGCCAGCCCAGAGCCCCAGAAGGAGGCCCTCGATCTTGGCTTGAGATCATCGCCGAGCTCCTCGTCGCCTGCGAGGCAGAGTCCCATCTCGTCCGCGGCCAGTATGCCCATAAAGCGCGAGCTTGAACACAACTCGTCCACGGGAGCAACGGCGAATAAGAGGCTATGCATGGACGAGGACAGTCCTCCGGAGAACAACATCTCTGCGCTGCCCGGCACGCACATCAAGATCTCAAATCGAGGGGATGGCCGCGACAACTCGCTGGTCGTCAGCATGGAGCTGAACGGCGTGATGTACCAGGGTGTACTGTTCGCGCAAACCGACGGCAGGGCCAGCTTGGCCGCCTCGACCAACAACAACGAGACCAAGGCCTCTAGTCGCAACGTCGTCTCGTGA
- Protein Sequence
- MMFPKESSLLENSYQSSENWEDEELSKSGSTNGKSSSFSDSSMSLLNKLYEINDDPKRKEFLDDLFSYMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKQLSTPAELQAAIDGNRREGRRSNYGAYGGGGGTGGGDSLVHQRSPHSQSSLASLHGQINPISLVTAVQAAAAGGQHQVPNPQNLVNGSAAHTPLPQHPHHPHLQASFGGTPNAGGIAPEFEVRMAAEYLKQWQRDLGRRAAGSPTNLMNHRQGSDSPPPRSPSREAALFEMSRFTLWNMYNNNLHPGLGYPQAVSPQPSSHSPQGHPASPEPQKEALDLGLRSSPSSSSPARQSPISSAASMPIKRELEHNSSTGATANKRLCMDEDSPPENNISALPGTHIKISNRGDGRDNSLVVSMELNGVMYQGVLFAQTDGRASLAASTNNNETKASSRNVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00079598;
- 90% Identity
- iTF_00714165;
- 80% Identity
- -