Svar007616.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- MBD2_1
- Assembly
- GCA_949127995.1
- Location
- OX421843.1:19234484-19236506[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-23 1e-19 70.3 0.0 1 74 9 78 9 81 0.91 2 2 1.1e-05 0.043 13.9 0.0 26 76 179 238 159 239 0.90
Sequence Information
- Coding Sequence
- ATGCAAATGAATTCCAGCGTTACCATCGAACGCAAACGTGTTGAATGCAGTGCACTGCCAAAAGGTTGGCAGCGTGAGGAAGTGCAACGAAAATCTGGTATCACTGCAGGCAAAGTCGTTGATGTCTACTACTACagCCCCACAggcaaaaaaattgaaagcaaACCGCAGCTGGCACGCCACATAGGCGACTCGCTGGACATGAGcagttttgattttcaaacGGGCAAACTCATTCAGCAACACCatctgccgccgccgcttcCGCCTCCTTCAATTTCGTTGTATCGCTGTAACAGTAGCAGCAcagccgccaccgccgctggCAACATGACTATGACAGCTTctggtggcggcggcagcgtAGGCAGCAATGGCGGTAATTCCGCTGCCACAGCCAACTCGCTTAAGCGCAAATATAAGTCACCGTCTGTGTCTGCGTCGTCGGGAGCCGGTTGCGGTAGCTTCGCTGCGAGCGGTTCTTCATCCGCCACCGTCGTTAATGCTGCGAATTTAAGACAGCAGATTGAATTCAGTCGCGCTCTGCGGACCGATATTTCACTTGTGCCACCGATTCGCCAAACGGCATCGATATTCAAGCAGCCGGTGACTGTGGTACGCAATcacgaaaacaacaaagttcGACACGACACAAAACACGGCGCCCAGGAGAAACCAAAACAGCTTTTCTGGGAGAAACGCCTGGAGCGATTGCGTTCGTGTCATGCTACTGGTGAAGAATTTGACGATATCGCGCTGCCCAAGGGCATACGTTCCGTAGGACCACAGGTGAACGAACAAACGGTGTTGCAGTCGCTGGCCACGGCGCTGCATGTACTGAATACGCCCGTTACGGGCCAAACCTCGACAAAGACTGAAATGATTAAAAACGCGACAGCGTTTATCAATCCGGAACAACCGCTTATGCAAGCAGTGCTCATTTCAGAGGACGACATTCGGCGGCAGGAGGAACGCGTCAGTGTGGCGCGACGAAAATTACAAGATGCACTAAAGGTTTAG
- Protein Sequence
- MQMNSSVTIERKRVECSALPKGWQREEVQRKSGITAGKVVDVYYYSPTGKKIESKPQLARHIGDSLDMSSFDFQTGKLIQQHHLPPPLPPPSISLYRCNSSSTAATAAGNMTMTASGGGGSVGSNGGNSAATANSLKRKYKSPSVSASSGAGCGSFAASGSSSATVVNAANLRQQIEFSRALRTDISLVPPIRQTASIFKQPVTVVRNHENNKVRHDTKHGAQEKPKQLFWEKRLERLRSCHATGEEFDDIALPKGIRSVGPQVNEQTVLQSLATALHVLNTPVTGQTSTKTEMIKNATAFINPEQPLMQAVLISEDDIRRQEERVSVARRKLQDALKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -