Svar021460.2
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949127995.1
- Location
- OX421846.1:35921790-35927832[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7 2.1e+04 -5.1 4.5 269 269 53 53 17 130 0.56 2 3 4.4e-116 5.3e-112 374.4 28.0 1 299 223 518 223 519 0.93 3 3 0.17 2.1e+03 -1.8 3.8 218 244 545 571 521 593 0.47
Sequence Information
- Coding Sequence
- ATGGATAGCGCCAGTGCTGTAGGCCGGCGTCGTGGCAATTCGCGCGTTAATGCCGAGGATCAAGCGCTTGATCAGATCGCTAAAGAGACGGAGACGAATAAAGAAGAGAATAACaatgtaaacaaatcaaataataataaaaacgatgaAATCATCGAGGAGTTCGACTTTAGTGATAGCGATTTAAAAGACCTAAGCGAAGGTGGAGAAGAGGAAGTAGAAGACGAAGGAGCTACCGATGCGACTGACAGCGATGAGGACGACAAAGATGCCAACGCGAGGAACAAAGTCAATATTAGCTCTGATAACAAAGCCGCATACACAACCACAAAAGATTCCACAGCAATAATCAAAGGAGAAACAAGTGGAGCAGATTTGTACAAAAGAAAGCCTATACCCGCCAGTTTGGAACTTAAAAACGACGAACTCATTGAATCTGATGACCAATCTAAAGAGTCCTATTGTCCCATAACACCGCAAAAGCTAGTTGACATCGAAGAAACGGAAAAGTCTTCAAcagttgttttgaaaaatatgacAAAGAAGCCGctgaacagcaacaacgacggcAACGTTGAGGAGCAAGAACCAGATGATGGttatgacgatgatgacgaacCAGATGATGAATTGCTTGTGCAATTTTTGGGAGAAGCTAATCGCATTGCTGAAGCTAGATTGGCCGCGCGAAGACAGGCACGTGCAGAGGCTCGAGAAATACGCATGCGCGAATTGGAGCGTCAGCAAAAGGAACAGGAACAAAATGCCGATCGGGTTTTTGATATGCACACTGCATCAGGCATCGATCCTTTATCGAGATCACGGCTCGCCACTGGCGGCGGCGGTTCGACCGGTGGCCTTCTCAACTCGACAGTTCGCGGCAGTTCGATGTCGTCGCGGCGCAGCAGCGAGGATTCCCTGGAAGAAGAAGGACGCAGTCTTCGAGACATACGACATGAACTTAAGGATGTCGAGGAACGGTTTCGCAAGGCGATGATCGCCAATGCACAATTGGACAACGAGCGCGCCTCTCAGACGTATCAAATTCAGCTGCTTAAAGACAAACTCGAAGAGATGGAAGAATCGTACGCGCAGTTGCAGCGTGAGTTTAAGGAAAAATCACGTGACTGCAATGCACTGAAGCGCAATCTGGACAAACTAAGTGAGGAGCTGAAGCTCGTTCAGGGTCAGTTGAGTGAACGTGATACGCTTATTACGGAACAGGGTCTAGTAATTGTCGCCGTCGAGAACGAGGACAGCACCGATGCTAAGCGTGCTCTAGTCAGTGTGGAGAATGCCCAGCTATTGGGCTCTGTGCAGGGTTCACTAGATGTTCGACTTAAAAAGTTTACCGAGGAGAAGCAACAACTTTCAATGGAAGTGCAACAGCTGCAGGAACAATTGGAAAACTATAGGAGTCAAGGCAAAGGAGGTCGCGGCAATTCTATAAACGGTCCATTGGGGTCTGATGAGGATTATGAAGCGCAAagagaggcaaataaaataatctcagactacaaatataaattgcaaaaggCTGAACAGGAGATCGCCAGTTTACAGGCCAGTTTAGCGCGTTCCGAAACGCAAGTAATTCGCTACAAGAGCACAGCAGAAGCAGCGGAAAAAGCCGAATCGGAACTTAAAATCGAAAGAAGAAAACTACAGAGAGAGAACCGTGAGGCCAGTGAGCGGCTGGAAGAGTTGGAGACATCTAATAATCACCTGCTGAAGCGATTAGACAAATTAAAGAATGCCAAGAGTGCGCTGCTCAAGGACCTTTGA
- Protein Sequence
- MDSASAVGRRRGNSRVNAEDQALDQIAKETETNKEENNNVNKSNNNKNDEIIEEFDFSDSDLKDLSEGGEEEVEDEGATDATDSDEDDKDANARNKVNISSDNKAAYTTTKDSTAIIKGETSGADLYKRKPIPASLELKNDELIESDDQSKESYCPITPQKLVDIEETEKSSTVVLKNMTKKPLNSNNDGNVEEQEPDDGYDDDDEPDDELLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHTASGIDPLSRSRLATGGGGSTGGLLNSTVRGSSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEMEESYAQLQREFKEKSRDCNALKRNLDKLSEELKLVQGQLSERDTLITEQGLVIVAVENEDSTDAKRALVSVENAQLLGSVQGSLDVRLKKFTEEKQQLSMEVQQLQEQLENYRSQGKGGRGNSINGPLGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAESELKIERRKLQRENREASERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -