Svar005758.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421842.1:58730978-58740243[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.7e-11 1.1e-07 31.9 0.0 1 38 636 674 636 679 0.89 2 4 8.5e-14 1.6e-10 40.9 0.1 2 39 691 728 690 731 0.94 3 4 2.1e-17 4e-14 52.5 0.0 1 45 745 790 745 790 0.98 4 4 1.1e-19 2e-16 59.8 0.0 1 43 797 840 797 842 0.96
Sequence Information
- Coding Sequence
- ATGAATTCGGCAGTGaaatatcatcatcatcaacagcagcagcagcagcagcagcaagagcaacagcagcagccttCACTGACTGCCGCCTTTATCCATCCAACCGATGCGTTTCGCTTCAGTCTCAGCgccatttctttttcttcgcCTCAAACGGATGCTGGCGTTGTTGCTGAAGCCTTTTCCGGTTTGCTCCGCACCGCCGAACAGTTGAAAATCAAAGGACTTTGCGAGACCGCCGAAAATACCGACGATCTAAACGACGCCGCCACCGCGACAATAACCGTTTCggaaaatatacaacaaaccGTTGTTGGCAATATCGTAAGCACAGTAGCGCCAGGTCCGCTATCGCCCAATACACAAGCGCAGCAACAGGCACAggcgcagcagcaacatcagcaacaacagcagcagcagcaacatcagcaacagcagcagcagcaacaacaacagcagcagcaacaaatagCCAATGCAGCAGTGCTAACGACACACGGCTTGGCTAACGTAAACGCGGTGAACGCACAGCAacttgccgccgccgctgccgctggaGGACAATTAATTGCCACTACTTCGGGCGtgccaacaacacaacaacagcagcaacaaattgcTGGACGCAAATCACGTGTACGCAAGCGCTCTAAATCGCCGGATCTACAattacagcaacagcaaacacaacaccaccaacaacaacagcagcaacaacatccaCAGGCGATActaatacaaaatcaaaatcaagcCGCAATCGTTTCGCTGCAACAAACCTCCACCGGCAGTTATATACCCGTAACCGGTTCCGTACAGACTGTGACGACATCCGCGCTTACggcacaacaacaagcagCGCTTGTTGCCAGCGGTGAAGATTCCGATTCGGAGAAACCCACATTGCATAAGATTTGCAAGACCGACGcagttgctgccgctgccgcgtCTGTTGCATCGCCTGCATCGAATTGCTCGTCCGGTTCGATATCGAATAATGCGAATGCTGGTGCAGGAGCAGGCGGAGGAGTAACCACAACCGTAACAACACCGGGCGGCACCGCCATTGTCACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGCATCTTGGGCGTACCGATGGGCTTCTTGGATTTTGCGCCCGAACCACCGGCACCGTCTGCAACGCCAGTCACCGTAACGGAACACGTCGACTTGTCCTGTAATCCCAGCACCGATACGCGTGATCTATCAAatCCCACCGAACCGCTCGATATCGACAATCATCTGGCCCAGCACATGATACAACGGCTCGATCAATCTCCAATGCACACCATGCACCATCAAACAGGCGACGAAAGCAATTCAAATCTGGTGCAGCACATCAAAAGCGAAGTTATTGaagcgaaacaacaacagcagcagcaacagcaacaacaacagcagcagcagcaacaacagcaacagcagcaacaacaacagcagcagcagcaccatcaatcacaacaacatcagTTGCACGCTCAACAACTGGTGCAAGGACAAtctcagcagcaacaacatcaacagcagcagcaaacacaTCAACAGCAAacgcatcagcaacaacaacaacaacaccagcaacagaCGCATCAAGAAATCACCGGTGCGACTGTTATGGAGATTGATCCGAGCCAAATAAAACACGAACCGGGCATGATTATTACGCCAGAAATTGTTAACATGATGACCACTGGGCATATGGATATGTATAATTCCGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCACCGAACGATCAAAATGAGCCGCACTACACCAATTTGGACCAACAACAGGGCGATATCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGCCTGACGAAAGCCTCCGTCACGTATGGCATCCCGTCGACCACCCTTTGGCAGCGGGCCCATCGCATGGGCATCGAAACGCCGAAGAAGGAGGGCGGCACCAAATCGTGGAACGAAGATGCCCTCAATAATGCTTTGGAAGCGCTACGCTCCGGACAAATATCAGCTAATAAGGCATCGAAAGCCTTCGGCATACCCTCGTCGACGCTGTACAAGATCGCACGTCGTGAGGGTATACGCCTGGCGGCGCCCTTCAATGCCGCACCCACAACATGGACTCCAGAAGATTTGGAGCGTGCATTGGAGGCAATACGCGCCGGCCATACGTCCGTCCAGAAAGCGAGCGCTGAATTCGGCATACCGACAGGAACGCTCTACGGACGCTGCAAACGCGAGGGCATCGAACTGTCACGTTCGAATCCGACTCCATGGTCTGAAGACGCAATGAACGAAGCGCTTAACTCAGTACGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATCCACTACAATCTGCCCTACAGTTCGCTCTACGGACGCTTTAAGCGCGGCAAATACGATGTGACCAATACGAGTGGCATCTCAATGATCAACACATCAGGAAACACCAGTGGCAGCATCGAAATAATCGAGCACAGCCAAGAGAATTCGATGAACATGTTTCAGCAACAGTTCCAGTACAGTCCATCGccgcaccagcagcaacacgGCGGCACATCACAACCGCAAACGCCGCAGACACCGCAACACCTGCAACAACATGTCGTACAcatccagcagcagcaacatcaccaGCAACATGCGCCCCAGCAACATATCCAACAACAGGACGTCGTCACATCGAGCagtcagcaacagcagcagcaggtcGCGCATACGAGCGCCTcagcacagcaacaacaacagcagcagcaacagatcCAACAGATTTATCATCATCACAGCACGCCCGAGAGAAGTTGA
- Protein Sequence
- MNSAVKYHHHQQQQQQQQQEQQQQPSLTAAFIHPTDAFRFSLSAISFSSPQTDAGVVAEAFSGLLRTAEQLKIKGLCETAENTDDLNDAATATITVSENIQQTVVGNIVSTVAPGPLSPNTQAQQQAQAQQQHQQQQQQQQHQQQQQQQQQQQQQQIANAAVLTTHGLANVNAVNAQQLAAAAAAGGQLIATTSGVPTTQQQQQQIAGRKSRVRKRSKSPDLQLQQQQTQHHQQQQQQQHPQAILIQNQNQAAIVSLQQTSTGSYIPVTGSVQTVTTSALTAQQQAALVASGEDSDSEKPTLHKICKTDAVAAAAASVASPASNCSSGSISNNANAGAGAGGGVTTTVTTPGGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTMHHQTGDESNSNLVQHIKSEVIEAKQQQQQQQQQQQQQQQQQQQQQQQQQQQHHQSQQHQLHAQQLVQGQSQQQQHQQQQQTHQQQTHQQQQQQHQQQTHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQNEPHYTNLDQQQGDIKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDALNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGISMINTSGNTSGSIEIIEHSQENSMNMFQQQFQYSPSPHQQQHGGTSQPQTPQTPQHLQQHVVHIQQQQHHQQHAPQQHIQQQDVVTSSSQQQQQQVAHTSASAQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- -
- 80% Identity
- -