Smeg002327.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- -
- Assembly
- GCA_958496365.1
- Location
- OY292514.1:8283185-8292698[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.015 1.2 10.5 0.3 2 20 219 237 218 241 0.93 2 11 0.2 16 6.9 0.5 5 23 250 268 245 268 0.86 3 11 0.00037 0.029 15.5 2.8 1 23 309 332 309 332 0.93 4 11 0.0024 0.19 12.9 0.4 2 23 367 388 366 388 0.96 5 11 0.00083 0.064 14.4 1.9 1 23 396 418 396 418 0.97 6 11 0.00016 0.013 16.6 0.9 1 23 427 450 427 450 0.98 7 11 0.00027 0.021 15.9 0.2 1 23 456 478 456 478 0.97 8 11 9.8e-07 7.6e-05 23.6 2.8 1 23 484 506 484 506 0.97 9 11 0.00049 0.038 15.1 1.0 1 23 511 533 511 533 0.98 10 11 3.6e-06 0.00028 21.8 4.2 1 23 539 561 539 561 0.97 11 11 0.00073 0.057 14.6 2.7 2 23 568 590 567 590 0.95
Sequence Information
- Coding Sequence
- ATGGCTCATGAAACTGAGCTGAGCATGAAAGACTTATGTAGATTATGTGCAAAAAAAGATGAGTTTTCAAAAGATTTGTTAGATGAAAGCAatagaaatgttttaaaacTCATACAagatttcatacaaattatcgtatatgaGAATGATACCCTACCAACAAAGATTTGCATCAATTGTGAGGAGAAAATGGTTTCATTTCAACTATTTGTAGCTGAATGCTATAAAGTTCAAGATGCACTTAAAAAGATATATGATGATAGACATGACTCTCTTCAAGTGAAACTTGAAAGGTCAGCTATTGATTTGGGAGTCACAATTAAATCTGAGGTAAAAGATGAAGTATCTGCAGAGGACTTagtttGTGCATTGAATAATGAGGCATCTAATTGGGACACTGAGGCAACATTTACAGTAATTGACGCTTATCCAAATAATCAAACCACAATAGGTAGTGACAATGACAATGCTGATAtacataatgatgatgatgttgaggaTAATGATGACTATCTGGATGACATTGCTATAGCATCACTGAAGAGAGTAAAACGTAAAAGGAtcagaagaaaagaaataaCAGAAACAGAGGCAGAACAGTTCAATCAAGTTCTTAAAAAGTCTAATTTGAAAGTGAAGGATTTtgtaaaATTGCAGTGTACTTTTTGTCAAAAGATAGTAAAAACATGGGGTCaattaagtatacattattGGAAGGGTCATCAGGCTGAACCATGTGTTTTCTGCCTATGTGGTTTTGCTGTAAGATCTAAAAGTGCTCTATATAAACATGTGTCAGATCACAAAATGGAAAGCAGAAAGTTAAAGAAGGATTTAGATTTAGATACTCATGACAATGATGATACTGATGAAAAGCAAAAAGAAAATGGTCTTTCAAGTTTGAATGTTAAAGATTTTATAAGatTTATATGTCGCAACTGTAATAAAGAATGTTCAAGTTGGTACAGTTTGAGGAGGCATACTGAGTACGCTCATAAAGTGAAGAAACCAGTGGTTGCTTGTAACTGTGGAATCCTTCTCAAGTCCAAGTCGGTTATGTACAAACACGTACAGGACCATAAAAATCCTAACGTCTTGTCATGTGATAAATGTCCTCGCATAACAAAAAGCCTAGCTGCTTTGAATAAACATAAATTGAGACATATACCGAAATTAGAAAGAAAGTTTAGTTGTGCCTCTTGCGACAAAATATTTCATTCTAGAGATGCATTAAAATCACACGAAAAATCACATATTCCGATAGAGGACCGTAAAATATATCGATGTGATATGTGCAATATGAAGTTCACGACGCGGTCGTCGGCGGCGTCCCACAAGCGCGTGGTGCACGACAAGATCAAGGGCTACGTGTGCGACCTGTGCGGGTACGCCTGCGGCACCAACGGGGAGCTGCGCCAGCACCGCGCCATACATAGCGACGACAAACCCTTCGCCTGCAGGAAGTGTCCAAAAAGATTCAAGACGTATTCAAACCTAAAGACGCACATGGACACCCACGAGGATACGTCGTATGAGTGCTTCATCTGCAGGAGAGTGTTGAACAGTCGCCGCACACTACGAAAGCATTTACTTGTACACGAGGACAAATGCAGACATGTTTGTTCCTACTGCAATAAGGCTTTCAAGAGGAGACAGACTCTAAAGGTCCACATGTACACACACACGGGCGACAAGCCGCTGTCGTGCAAGTGGTGTGAGGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCATCCCGACAAGATGGCGGCGCAAGCGCTCGACAACTACACCGGTTACAGACACGTTGCAATGCAAGAGGTGGACTATATAGAGAATGATGTGGTGGCTGTGACCATGCCGCCACCGATAGCAAAGAATGAAGTAGAGGCTATGTAA
- Protein Sequence
- MAHETELSMKDLCRLCAKKDEFSKDLLDESNRNVLKLIQDFIQIIVYENDTLPTKICINCEEKMVSFQLFVAECYKVQDALKKIYDDRHDSLQVKLERSAIDLGVTIKSEVKDEVSAEDLVCALNNEASNWDTEATFTVIDAYPNNQTTIGSDNDNADIHNDDDVEDNDDYLDDIAIASLKRVKRKRIRRKEITETEAEQFNQVLKKSNLKVKDFVKLQCTFCQKIVKTWGQLSIHYWKGHQAEPCVFCLCGFAVRSKSALYKHVSDHKMESRKLKKDLDLDTHDNDDTDEKQKENGLSSLNVKDFIRFICRNCNKECSSWYSLRRHTEYAHKVKKPVVACNCGILLKSKSVMYKHVQDHKNPNVLSCDKCPRITKSLAALNKHKLRHIPKLERKFSCASCDKIFHSRDALKSHEKSHIPIEDRKIYRCDMCNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFACRKCPKRFKTYSNLKTHMDTHEDTSYECFICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCEERFSYASTLRSHRLRCHPDKMAAQALDNYTGYRHVAMQEVDYIENDVVAVTMPPPIAKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00018403;
- 90% Identity
- -
- 80% Identity
- -