Apsi012943.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000046.1:238641-243862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0036 0.23 12.2 0.4 2 20 213 231 212 235 0.94 2 11 0.29 18 6.2 0.2 6 23 245 262 243 262 0.92 3 11 0.00055 0.034 14.8 3.7 1 23 297 320 297 320 0.95 4 11 0.0013 0.083 13.6 0.5 2 23 354 375 353 375 0.96 5 11 0.00043 0.026 15.2 2.4 1 23 383 405 383 405 0.96 6 11 0.00027 0.016 15.8 1.0 1 23 414 437 414 437 0.97 7 11 0.00023 0.015 16.0 0.2 1 23 443 465 443 465 0.97 8 11 4.5e-07 2.8e-05 24.5 3.0 1 23 471 493 471 493 0.98 9 11 0.00041 0.025 15.2 1.0 1 23 498 520 498 520 0.98 10 11 5.1e-06 0.00032 21.2 4.1 1 23 526 548 526 548 0.97 11 11 0.00014 0.0088 16.6 2.9 2 23 555 577 554 577 0.95
Sequence Information
- Coding Sequence
- ATGGCGAGAATGAGTATGAAAGACTTATGTAGACTATGTGCAAAGAAAGACGAGTTTTCAAAAGATTTGTTAGATGAAAGCAATAGAAATGTTTTAAAACTTATACAAGATTTCATACAAATTATCGTATATGAGAATGATACCCTACCGACAAAGATTTGCATAAACTGCGAGGAGAAAATGGTTTCATTTCAACTATTTGTATTTGAATGCTATAAAGTTCAAGACACACTCAAGAAGATATACGATGATGCATATGACTCTCTTGATGTGAAAGTAGAAAACACAAATATTGATATAGGAGTCACAATTAAATCTGAGGTAAAAGATGAAGTATCACCAGAGGACTTAGTTTGTGCATTGAATAGTGAGGAAACAAATTTTACAGTAATTCATGCTTTTCCAAATAATCAATTGCAAAGTACAATATGCAGTGACAATGACAATGGTGACTTACATAATGATGATGATGATGTTGAAGATAATGATGATGATATTGATGACATTGCTATAGCAACACTGAAGAGAGTTAAAAGCAAAAGGATCAGAAGAAAGGAAATAACAGAAACAGAGGCAGAACAGTTCAGTAAAGTTCTCAAAAAGTCTAACTTGAAAGTTAAGGATTTAGTAAAATTGCAGTGTACTTTTTGTCAAAAGATAGTCAAAACATGGAGTCTGTTAAGATTACATCTTTGGAATCAGCATCAAAGTGAACCATTTGCTTTCTGCCTATGTGGCTTTGCTGTCAGATCCAAAAGTGCTCTATATAAACATGTATCAGACCATAGAGCGGAAAGCCGAAAGTTAAAGAAGGATTTAGATACAGATGACATTGATGAAAACCAAGACAGTAGTTATTCAAGGTTGAATGTAAAAGACTTTATAAGGTTTATATGCCGCCACTGCGAGAAAGAATGTTCAAGTTGGTACAGTTTGAAAGCCCACACTCAGTATGCCCATAAAGTATCACCAGTGGTTTCTTGTAAATGTGGAATCCTTCTCAAGTCCAAGTCAGTAATGTACAAACATGTACAGGACCATAAAAATCCAAATGTTTTATCATGTGACAAATGTCCTCGCATAACAAAAAGCCTAGCAGCTTTGAATAAACATAAGATGAGACACATACCAAAATCAGAAAGAAAGTTTTGTTGTGCCTCATGCGATAAAATATTTAATTCTAAGGATGGATTAAAATCACATGAGAAATCGCATATTCCGATAGAGGATCGGAAAATATATCGATGTGACAAGTGCAATATGAAGTTCACGACGCGCTCGTCGGCGGCGTCGCACTCGCGCGTGGTGCACGACAAGATCAAGGGCTACGTGTGCGACCTGTGCGGGTACGCCTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGACGACAAGCCCTTCGTCTGCAGGAAGTGCCCCAAAAGATTCAAGACCTATTCAAACCTGAAAACGCACATGGACACCCACGAGGATACATCGTACGAGTGCTACATCTGTAGGCGAGTGTTAAACAGTCGCCGCACGCTGCGCAAGCATCTACTTGTACACGAGGACAAATGCAGACATATTTGTTCCTACTGCAATAAGGCTTTTAAGAGAAGACAGACTTTGAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGTCACCCCGACAAGATGGCGGCGCAAGCGCACGACAACTACCCCGACTACGGACACGTCGCCATGCAACAAGATTATATGAAGAATGATGCGGCAGCTGTGAACATTCCGATAGCAAAGAATGAATTAGAGGCTATGTAA
- Protein Sequence
- MARMSMKDLCRLCAKKDEFSKDLLDESNRNVLKLIQDFIQIIVYENDTLPTKICINCEEKMVSFQLFVFECYKVQDTLKKIYDDAYDSLDVKVENTNIDIGVTIKSEVKDEVSPEDLVCALNSEETNFTVIHAFPNNQLQSTICSDNDNGDLHNDDDDVEDNDDDIDDIAIATLKRVKSKRIRRKEITETEAEQFSKVLKKSNLKVKDLVKLQCTFCQKIVKTWSLLRLHLWNQHQSEPFAFCLCGFAVRSKSALYKHVSDHRAESRKLKKDLDTDDIDENQDSSYSRLNVKDFIRFICRHCEKECSSWYSLKAHTQYAHKVSPVVSCKCGILLKSKSVMYKHVQDHKNPNVLSCDKCPRITKSLAALNKHKMRHIPKSERKFCCASCDKIFNSKDGLKSHEKSHIPIEDRKIYRCDKCNMKFTTRSSAASHSRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCPKRFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHICSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAAQAHDNYPDYGHVAMQQDYMKNDAAAVNIPIAKNELEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01377752; iTF_00017566;
- 90% Identity
- -
- 80% Identity
- -