Smeg003459.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- salm
- Assembly
- GCA_958496365.1
- Location
- OY292515.1:7782947-7809171[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.45 35 5.8 1.9 1 21 49 69 49 70 0.94 2 11 6.3e-06 0.00049 21.1 0.9 1 23 369 391 369 391 0.98 3 11 1.2e-05 0.00097 20.1 2.1 1 23 397 419 397 419 0.98 4 11 1.6 1.3e+02 4.0 3.0 5 23 717 735 714 735 0.92 5 11 1.4e-07 1.1e-05 26.3 1.2 1 23 741 763 741 763 0.97 6 11 2e-05 0.0016 19.5 5.0 1 23 773 795 773 795 0.98 7 11 0.0092 0.72 11.1 2.2 2 23 974 995 973 995 0.97 8 11 0.027 2.1 9.6 1.5 1 14 1001 1014 1001 1015 0.94 9 11 0.99 76 4.7 0.0 10 23 1042 1055 1040 1055 0.93 10 11 5.6e-06 0.00044 21.2 1.7 3 23 1136 1156 1134 1156 0.96 11 11 6.7e-07 5.2e-05 24.1 0.5 1 23 1162 1184 1162 1184 0.98
Sequence Information
- Coding Sequence
- ATGATTCAGTTAGCGACGATAAAATTTGGCATACATGAGAAAGTGAGCACTAAAATTCGTCACCAGCGGGGTGAAAGTTCGGGATCGTGTTCCGAAGAAGATATAAACAATGTGTCTGATGAAACGAGAGACCGGCCTGAAGCGCACATGTGTCCGCGCTGTCAGGAACAGTTCGAGAACCTTCATGAGTTCCTGTACCACAAGCGACTATGTGATGAAAAAGCGTTGCAAATGGGCGAGGAAAGAATGCACTCTGATCCAGAGGAAATGGTTGTTTCAGGCGACGAAGAAATGGATGGACCTAACAAACGATTAGAACAAGTCCGACGGCATCGACAAGATGCGGAAAATAATAACAGCCTCGAAGATGGCGAGGCAGAAGTGCCTGAAGCCGACGTACCACCGGTCGGCCTGCCCTTCCCTGTGGCTGGCCACGTCACGCTCGAAGCTTTACAAAATACTAAAGTTGCCGTAGCGCAATTTGCCGCGACTACGATGGCGAACAACGCAGATAATGAAGCGGCGTTACACGAGCTGGCCGTGCTTCAAAGCACGCTATTTACACTACAACACCAGCAAGTGTTTCAGCTACAATTAATACGACAATTACAAAACCAGTTGTCATTAACGCGACGGAAAGACGATCAGCTCCCGAGTCCGCCACCGAGTGAACCAGAACCAGTACCGGCGCCAGCCGCTCGATCACCGTCGCCGCCTCGTCCGCCACGGGAGCCTACTCCTGTCGCACCCCCTCCTCCCACTAGTCAAAACTTGCCGTCAACTCATTCGCATCTCACACCTAAGACAGAACCTATCTCCGTTCCCAAACTTCCAACCTCGTCTCCACCGATGATGTCCCATCCGCCATACAGCTCCATTTCCTCATCGTTAGCGTCATCAATAATTACAAACAACGACCCACCTCCGTCTCTCAACGAGCCTAATACGCTTGAAATGCTACAAAAGAGAGCCCAAGAGGTGCTAGATAATGCATCACAAGGCCTACTAGCTAATAATCTTGCCGATGAACTGGCTTTCCGTAAGTCGGGAAAGATGTCACCATATGATGGAAAATCTGGAGGAAGAAATGAACCCTTTTTCAAGCATCGCTGCCGTTACTGCGGAAAAGTATTTGGAAGTGATTCGGCGCTGCAAATCCACATTCGATCGCACACAGGTGAAAGAccttttaaatgtaatgtatgtGGATCACGATTTACAACCAAAGGAAATCTCAAAGTTCATTTCCAAAGACACACAGCAAAATTTCCACATGTCAAGATGAATCCCAATCCAGTACCAGAGCATTTGGATAAATACCACCCCCCGCTGTTAGCGCAATTGTCGCCGGGACCAATCCCTGGCATGCCACCACATCCACTTCAATTCCCTCCGGGTGCACCAGCTCCTTTTCCGCCAAGCTTGCCGTTGTACAGACCCCCACACCATGATTTATTACCGCCTCGTCCACTTGGCGACAAACCACTACCACCTCATCCACTATTTGCAATGCGAGAGGAACAGGACGCTCCGGCTGATCTCAGTAAACCATCCGCGCCGAGCCCTTCTCGATCAGCACCAGAGGTTAAGTCTGAACCACAAGACGAAGATTGTCAACGCGATTCCAGTTTCGAAGACAATGATCGTGTATCTCCTAAGAGGGAACCTGATGAAAACGATACCACGCAAGACCCAGAACAAGACCGATATCCTTCAACATCACCCTACGACGACTGCAGCATGGACTCAAAATATAGCAATGAAGAACAAATCGGCAGAGAGAGTCCTCATGTGAAGCCCGATCCAGATCAACCGGAAAATCTCTCAAGTAAGAATTCACCGATATCCGGGCCAATTTCAATAGCGACGGGACTACGTACTTTTCCTTCGTTTCCTCTGTTCCCTCAGTCTCCCCCCAGCAGCATCTCCTCTGGTAGTTTAACTCCTTTTCCCAACACTGCTCAACATGTCGTTGATGTAGATCTGGCACGTGATCCAATGTTTTATAATTCACTTTTACCACGCCCAGGTAGCAATGATAACTCATGGGAAAGTTTAATTGAAATAAGCAAAACATCTGAAACATCAAAGCTTCAACAATTAGtcgataatattgataataaagtATCCGATCCCAACGAATGTATTGTATGCCACCGTGTTCTCTCTTGCAAAAGTGCGTTGCAAATGCACTATCGTACGCACACGGGCGAGAGACCTTTCCGATGTAAATTGTGTGGCCGGTCTTTTACGACTAAAGGTAATTTGAAAACCCATATGGGTGTTCATCGAATTAAACCTCCACTTCAAATGTTTCATCAGTGTCCAGTTTGCCATAAGAAATTTTCGGATCCTACCATGTTACACCAACATATTCGACTTCATACGGGTGAGCGCGCCCACGTCTCTTACGATCAATTCAGAAATATCGATATTGAGAGTTTTCCATCACTGAGTAACGGGTCAGACGTCAGCGACTATCAAGCTCAGCGCCCCTTCCTGCGACCGATGTTCCCTACTCCGACCACTCCCGGCGACCGACGGGCGGACTCCCGCGGGACCGACGATGAGAGCGGCCGGGACGAGCGCGAGCCCGCAATTCGGGAGTTCGACGAAGTCTTAGATATGAAGGATCGTCGAACTTCGCCGCTCTCCGTCTGCGCCTCGGCGTCCGAAAGCGAAATAAAAACCATCACCACAACGGCTTCCCTCCCATCGGCGACAGGTTCGGAGAGCGGGCGGAGCGCGCGTGCTTCACCGCCGTCGCCCACCATGTCGACGCTGTCGACGCCGCCGAGGCTGCCGCTGCACTCGCCGCTGCCATCGCCGCCCACGCCTATCGCCGCGCTCGGCGCGCTCGGAGGATCGCCCTTCAGCCCGCTCGGACTCGCGTTCCCTCCCGCAGTGCGCGGCAACACGACCTGTAACCTCTGCTACAAGACGTTCGCCTGCAACTCTGCTCTGGAGATACATTACCGGAGCCACACTAAGGAGCGACCGTTTAAGTGCAACGTCTGCGATCGCGGATTCTCCACAAAGAGCAGTGGCGGCGGTTGCCGGTGCGGTAGGCGCGCGCGCGCACCCCGCCCCCCGCACGCCACTGCTTTGGACCTGTGGAACGCCTTCGTTTACCCGGGCAACATGAAACAGCACATGTTGACGCACAAGATACGCGACGTACCTCCCGGGTTCGACAAGAGCTCGGGAGGCACCGACGAGGGCCGAGAACCAAGCCCGGACCGTCGCTCGTCACCCGACAAGTTTGACCTCAAGCGATCACCGCCTGCGCACCCTCCGCCACAAATGAACCACCCCCCACCTATCGACATGCCGCCACTGCCTAAACGCCCCAGTGTTCCCAGCGGCCCGACGCACCCACCGCCGCCGGCATCGTCCAAGCACCTATGCGGGGTGTGCCGTAAGAACTTCTCCTCGTCGTCCGCACTACAGATCCACATGCGGACGCACACTGGCGACAAGCCCTTCCGATGCGCTGTATGCCAGAAGGCCTTTACAACGAAGGGTAACCTCAAGGTGCATATGGGAACGCACATGTGGAGTGGGGGAGCGTCTCGGCGCGGGCGACGCATGTCCCTCGAGCTGCCTCCGCGGCCGCTACATGAGCCGCACGACTTACTGCGCCGTCCCGACCTCTTCTACCCCTACCTACCCGCGCCCTTCCTCAACGGCATGCAGCAAAAGCTCAATGAGATATCAGTGATACAACAGAGCGCGGGTCAAAATGGTGTAGCTGGAAAATTCCCGGGACTTCTCGGTTTTGGAGCATTTGGCGGCGTGCGACCGGGTGCTGCGTCACCGCTAGAGCGACCGCCTTCACTAGAAGGTGGCGATGAGAGGCAAGCTGCCATGCGTGAGCTGGCAGAACGCGGGCGCGAGCTAGCGGAGCGCAGCCGGCAGATGCGCGAGGACAACGAGTACCGGTCACCGCCAGCGCACGGTGCGCACGCGCCGCCCCCCGCGCAGGCGTCGCCGCCCGCGCCTCACCACCAGCACCCGCTGGCGCCGCTGCCGCCACCCGCGCGCACTGAAGGCCTCACCGTCTAA
- Protein Sequence
- MIQLATIKFGIHEKVSTKIRHQRGESSGSCSEEDINNVSDETRDRPEAHMCPRCQEQFENLHEFLYHKRLCDEKALQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATTMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDQLPSPPPSEPEPVPAPAARSPSPPRPPREPTPVAPPPPTSQNLPSTHSHLTPKTEPISVPKLPTSSPPMMSHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPAPFPPSLPLYRPPHHDLLPPRPLGDKPLPPHPLFAMREEQDAPADLSKPSAPSPSRSAPEVKSEPQDEDCQRDSSFEDNDRVSPKREPDENDTTQDPEQDRYPSTSPYDDCSMDSKYSNEEQIGRESPHVKPDPDQPENLSSKNSPISGPISIATGLRTFPSFPLFPQSPPSSISSGSLTPFPNTAQHVVDVDLARDPMFYNSLLPRPGSNDNSWESLIEISKTSETSKLQQLVDNIDNKVSDPNECIVCHRVLSCKSALQMHYRTHTGERPFRCKLCGRSFTTKGNLKTHMGVHRIKPPLQMFHQCPVCHKKFSDPTMLHQHIRLHTGERAHVSYDQFRNIDIESFPSLSNGSDVSDYQAQRPFLRPMFPTPTTPGDRRADSRGTDDESGRDEREPAIREFDEVLDMKDRRTSPLSVCASASESEIKTITTTASLPSATGSESGRSARASPPSPTMSTLSTPPRLPLHSPLPSPPTPIAALGALGGSPFSPLGLAFPPAVRGNTTCNLCYKTFACNSALEIHYRSHTKERPFKCNVCDRGFSTKSSGGGCRCGRRARAPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDVPPGFDKSSGGTDEGREPSPDRRSSPDKFDLKRSPPAHPPPQMNHPPPIDMPPLPKRPSVPSGPTHPPPPASSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQSAGQNGVAGKFPGLLGFGAFGGVRPGAASPLERPPSLEGGDERQAAMRELAERGRELAERSRQMREDNEYRSPPAHGAHAPPPAQASPPAPHHQHPLAPLPPPARTEGLTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00689616;
- 90% Identity
- iTF_00707229;
- 80% Identity
- -