Smeg024890.2
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- -
- Assembly
- GCA_958496365.1
- Location
- OY292542.1:2407118-2409728[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.001 0.078 14.1 0.7 1 23 5 27 5 27 0.92 2 16 2 1.5e+02 3.8 0.2 2 23 56 78 55 78 0.92 3 16 0.00068 0.052 14.7 0.5 1 23 100 122 100 122 0.98 4 16 0.001 0.078 14.1 0.2 1 23 126 148 126 148 0.95 5 16 0.0045 0.35 12.1 0.3 1 23 153 176 153 176 0.95 6 16 0.00041 0.032 15.4 3.6 1 23 182 205 182 205 0.97 7 16 0.036 2.8 9.3 0.3 1 13 212 224 212 227 0.84 8 16 0.029 2.2 9.6 0.3 1 23 338 361 338 361 0.96 9 16 4 3.1e+02 2.8 0.1 3 23 387 408 385 408 0.78 10 16 0.33 26 6.2 0.1 1 23 432 454 432 454 0.92 11 16 8.2e-05 0.0064 17.6 0.2 1 23 458 480 458 480 0.98 12 16 8.6e-05 0.0067 17.5 0.5 1 23 485 508 485 508 0.96 13 16 0.003 0.24 12.6 0.3 2 23 515 537 515 537 0.93 14 16 0.059 4.6 8.6 6.5 1 23 544 567 544 567 0.96 15 16 4.6e-05 0.0036 18.3 4.8 2 23 574 595 573 595 0.96 16 16 0.00012 0.0091 17.1 1.7 1 23 601 623 601 623 0.98
Sequence Information
- Coding Sequence
- ATGAAAAATCTATACATTTGTTTCTATTGCGACCAACAGTTCTCTGACCCTGAGAAATTGAGGCTACATAACACAGAACATCGTTTTCTTACAACGTATCAAGTGAAATTCGCTTTAGCAAAGCTTAAAAAGTACGAACTAGTTAAAGTCGACATCACTGACATTAGTTGCAAGCTTTGCGAAGACTCGATCACAGATTTTGCGACATTAAAATGGCATTTACTAGAAAAACATAAGAAAAATTTGGATCCTAAATCTGGAGACGGTGTTTTGCCGTTCAAAATAACGTCTAAAGATTTCCCTTGCGCCCTGTGCAATGAAAAATATACTGAGTTTAAATCTCTGAACCAGCATATGAACGTGcattttcagaattttataTGTGAGCAATGTGGTACGGGTTTCATTACTCCGGAACGTTTGAGGACTCACGCGTTTTCACACGAAACAGGGTCATTTCCTTGCGATAGCTGCGACAAAGTATTTCGATCGACTAACGCGAAAAATGAACACTATGCCACAGTACATATGAAAGTCAAACGTCACAGATGTCCACATTGCCCTGAAGCGTTCAGGAACTACTTCCAAAGAAACAAACACATCTCAACCATCCATGGCTTAAAGCTGAAAGAATTTAAATGCACTATGTGCCCGAAAGTCTTCACCATCAGTGGGAAATTAGGATCCGACACACCTGAATCGAAGCGAAGAATCATCCCGTTATTCCAAGTCGCTTATGACAGAAGCTTGTGTAGACCTCTTGGAACATTAGTGGACTTTAATAGAATAAGGCCAAAGAGTATTAAAACCTCTTCTGTCTTTCGAAGAGATTTCACATTGCCCCGAAGTCCTTCACCAGTTTATCTACCGAACGCTCCATCACCtttaatagaaaacctgtcTATAGACATTGCTGCTCCAAAATTGAAGAAGAATACAGATATTAGACAGAATGCCCTAGCTGTATTTGAGTTCTCAACTGTCTACCCGTTTATTTATGGGAGCAATAAGTTCAAGTGTTTCGTTTGCTCGCAGCCGTTTCTGGATATCAAAGAACTGAAAGTACACATGCAAGCAACTCACACATTTGCTCCTCTAAAGAGATTAGTGAATAACCGAAGAGAGAACGTCTTAAAAGTGGACGTGAGCGAAATTATGTGCAAGATTTGTTCAGATAAACCTGCTAATCTGGTCGAATTGAAGCGCCATCTCAAAGAAATACACGACAAACCTTTAGATTTGGATTTACAGGACAATATGATACCATTCAAGCTGGAACTTGTCGACGATGCTTATAAATGCGTTATATGCGAACAGAACTTCATCAAAGTAAGAATTTTAGTCATCCATATGAGTGAACACTTCAATAATTACAGCTGTGAGATTTGCGGTTCTGTATTCATGACGTTGCGACTCCTGAAAAAGCATTTGGAAGTTCACGATTCGGGAAATTTCCCTTGCGACCGATGCAACAAAGTTTTTAGTACGCCATATAAACGAACTTTGCATATCCGAGGGGTGCATCTCAAACAGTGCCCGAGAAGATGCCCAATTTGCCCAGAGAAATTTAACTCCAATTATAAGAGAACAATTCATTTGCAAGATGTTCACAATCAAGAGACCAGAGTGCACAAGTGTAAAACTTGTGGCAGAGGTTTCAATCTGAAATACCACTTGGTCTGCCATGTTCGGTCTGTTCATCTTCAGGAGAGGAATCAGCAATGCGATGTGTGTCATCAGAGGTTTTGTAACAAGGAGTCTTTGAAGCGACACATGGTTATCCACACTGGAGAGAAGAATCATAAGTGTGATGTGTGTGGAATGGCTTTCTTGAGAAGGAAGAATTTGAAGGATCATTTGCGGTTGCACgatatttaa
- Protein Sequence
- MKNLYICFYCDQQFSDPEKLRLHNTEHRFLTTYQVKFALAKLKKYELVKVDITDISCKLCEDSITDFATLKWHLLEKHKKNLDPKSGDGVLPFKITSKDFPCALCNEKYTEFKSLNQHMNVHFQNFICEQCGTGFITPERLRTHAFSHETGSFPCDSCDKVFRSTNAKNEHYATVHMKVKRHRCPHCPEAFRNYFQRNKHISTIHGLKLKEFKCTMCPKVFTISGKLGSDTPESKRRIIPLFQVAYDRSLCRPLGTLVDFNRIRPKSIKTSSVFRRDFTLPRSPSPVYLPNAPSPLIENLSIDIAAPKLKKNTDIRQNALAVFEFSTVYPFIYGSNKFKCFVCSQPFLDIKELKVHMQATHTFAPLKRLVNNRRENVLKVDVSEIMCKICSDKPANLVELKRHLKEIHDKPLDLDLQDNMIPFKLELVDDAYKCVICEQNFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPICPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822235;
- 90% Identity
- -
- 80% Identity
- -