Smeg010320.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Subacronicta megacephala
Gene Symbol
clz9
Assembly
GCA_958496365.1
Location
OY292522.1:9271917-9274436[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-08 1.2e-05 25.6 0.0 3 40 16 54 15 58 0.91

Sequence Information

Coding Sequence
ATGGGAAAGtatcaaagaaaaacaaaaagagGATCATATCCTAAGGAGAAATTAAGAGAAGCTGTACAAGAAGTTGAAAACGGTAAGATGAGTGGATATCGTGCATCGAAAACATACCAAATACCCAGAATGACTATGATGGACCATGTAAAAAAAAGACGAGGAAAATCTACTACGCTTGGGCGAAATACAGCTATATCACCAGATATAGAATATAAATTGGCTAAGAGTCTCCatttaatggaaaaaaatgGTTTCGGACTTAGTAGAACAGAAGTTTTAGAAATGGTGAGAGATTATGTTAGCAGAAACAATCTAATTACACCTTTTAAAAATTGTACACCCGGCAAAGACTGGTTCTTGGCTTTTAAAAAACGTCATGGATTATCCGTCAAAAAGCCGCAAGCTGTAGAGTACGCGCGAAAAAGGGTTATGGACCCGTTTATTATCTACCCCTATTTTGATCTTCTGGAAAAGACAATAAGCGATTTAAATTTGACTCATAAGCCGTCGTGCATCTGGAATCTCGATGAAACGAGCTTTTCGAGAGACCCGTCTAAAACTAAAATTGTTGGTGCAAAAGGTTATGCAGCAACGAGAGTTATCTCTTCAGCTGGTAGAGATAATACTACAGTGTTACTTGGTGCCAGCGCTTCAGGAAAAAAGACACCGCCTCTGATTATCTATAAAGGGAAAAATGTATGGGACACTTGGACTTCTTCCGAAGCGTATCCGGGCACATCTTATGCGGCAACAAAAAACGGTTGGATGGAAACAGACGTGTTTGAATCGTTCTTCAAGAAAACTTTTTTGCCTGCTGTCCAAGACCAACGCCCGGTGCTTCTTATATATGATGGGCACTCCACACACGTAGGGCTGCATATTATTGAAGAGGCTCgcaaagaaaatataacaattttgaAATTGCCACCGCACTCTAGTCACATTTTACAACCACTTGATATTGCAGTGATGAAGCCATTTAAAGATCGCTGGGATGCTTTATTGGTGAAGTGGCAGCGGTTGAATGTAGGGAATGTTATGCCAAAAAGTGAGTTTGCTAAACTAGTTGGACAAATATGGGCTGAAATAGATCCACAAGTGCTACGTAATGGATTCAGAAAAGCTGGTATACACCCTATAAATCGCGAAGAGATAAAAGAAAACCAGTTCGATAGCTTAAAACTAAGACATTGGAGAGAAtacgaaaataaacaaaatgaaaatgataaCACAATAAAGAGGAACCCAAAAAGTTTGCTGACgctaacattaaatttttacaataaaacccCGATACACAAAAACcctgaaattttaaaagaaattaccTTCCATAATAAACCTTTGGAAACTACTACACGagatcataacataacattcgaAGAACTACTTCTACAAAAAGTGAGACGTGGTGATAGTTCACCTAAACCACGGCGACGAAAGGTAGCACCGGGTGCTGAAGTCATAACTCACAATGATGTTTTGGAAAGGAAGCAGGAAGAATATAGAAAACAAGCTAAAACATACACAAATAAGAATCTGACAAGAGGTAAAGACGCACAATCGCAATCTCCTAAAACTACCAATGATGTTGTTTACTTGACGAATGTTTCAAAAAACGATTGTCAATTGCGCCCTTTTGCAGTAAAAGACGTAAGTAACCTACCTCCTTGCTTACAGAGCGACAAATCGAATtctcctaaaataaatataatttctaatatattaattaaacaaccCAATACCGAAAAAGaccaaaacattttcaaaactaaaaaccaaaaatattacaagactACTAAACCGACAATACcgggtaaagaaaataaagttttacaaagCAAGATACAATTACGCAAAGACATAAAACCAGCAAAAAAGCAAAATGATACTAAGGTTTTGAATACTAAATTTCAACAGTATAAAAAGGCTGAACAATCCAGTAAACGGAAAAATAAGACTTTCGACTCTACAAACATCTACGAAAACCCTAAACCAGGATCATCGGGACTTTGTAAATCCAAATATAGACGTCCTTCTTCATCTTCAACTACCAGCGTTTCCGGTTCAATTAGTGACTATGGCGATTCAGATATAGTATCAGATAGTTCTATTTTAATAGATGAAGACGATGAAAATAACCATGACACATTACCACAAACTTTAAATATACAATCGATAAATGAGTTTACACCCGTCGTAGATCATGATAATGAAAAACATGAAATCCGCATGTATCATTCCGGGGACGATGTCTTAGTAAGATACCATATCAGACAAAAATGGACGTATTACGTCGGGcgaattgaaaatattaaaataaaggaGGATGAACTATTTTACACAACACGAgtttacaaaacaattaaaaaaccaGAACTAACATTTAAAATGACGAAGAAAATCGATAGGGATGATGTTCCTGAGATATTAatagtgaaaaaagttgatttaACACAAGACCCTATAACACTGAATTACTTTTTTGTGAATGATGACAATTCGATTTACTTTTAA
Protein Sequence
MGKYQRKTKRGSYPKEKLREAVQEVENGKMSGYRASKTYQIPRMTMMDHVKKRRGKSTTLGRNTAISPDIEYKLAKSLHLMEKNGFGLSRTEVLEMVRDYVSRNNLITPFKNCTPGKDWFLAFKKRHGLSVKKPQAVEYARKRVMDPFIIYPYFDLLEKTISDLNLTHKPSCIWNLDETSFSRDPSKTKIVGAKGYAATRVISSAGRDNTTVLLGASASGKKTPPLIIYKGKNVWDTWTSSEAYPGTSYAATKNGWMETDVFESFFKKTFLPAVQDQRPVLLIYDGHSTHVGLHIIEEARKENITILKLPPHSSHILQPLDIAVMKPFKDRWDALLVKWQRLNVGNVMPKSEFAKLVGQIWAEIDPQVLRNGFRKAGIHPINREEIKENQFDSLKLRHWREYENKQNENDNTIKRNPKSLLTLTLNFYNKTPIHKNPEILKEITFHNKPLETTTRDHNITFEELLLQKVRRGDSSPKPRRRKVAPGAEVITHNDVLERKQEEYRKQAKTYTNKNLTRGKDAQSQSPKTTNDVVYLTNVSKNDCQLRPFAVKDVSNLPPCLQSDKSNSPKINIISNILIKQPNTEKDQNIFKTKNQKYYKTTKPTIPGKENKVLQSKIQLRKDIKPAKKQNDTKVLNTKFQQYKKAEQSSKRKNKTFDSTNIYENPKPGSSGLCKSKYRRPSSSSTTSVSGSISDYGDSDIVSDSSILIDEDDENNHDTLPQTLNIQSINEFTPVVDHDNEKHEIRMYHSGDDVLVRYHIRQKWTYYVGRIENIKIKEDELFYTTRVYKTIKKPELTFKMTKKIDRDDVPEILIVKKVDLTQDPITLNYFFVNDDNSIYF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01377411;
90% Identity
iTF_01377411;
80% Identity
-