Smeg003580.3
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- clz9_1
- Assembly
- GCA_958496365.1
- Location
- OY292515.1:9443203-9445722[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-09 3.3e-06 27.4 0.1 2 41 15 55 14 58 0.90
Sequence Information
- Coding Sequence
- ATGGGAAAGtatcaaagaaaaacaaaaagagGATCATATTCTAAGGAGAAATTAAGAGAAGCTGTACAAGAAGTTGAAAACGGTAAGATGAGTGGTTATCGTGCATCGAAAACATACCAAATACCCAGAATGACTATAATGGACCATGTAAAAAAAAGACGAGGAAAATCTACTACGCTTGGGCGAAATACAGCTATATCACCAGATATAGAATATAAATTGGCTAAGAGTCTCCatttaatggaaaaaaatgGTTTCGGACTTAGTAGAACAGAAGTTTTAGAAATGGTGAGAGATTATGTTAGCAGAAACAATCTAATTACACCTTTTAAAAATTGTACACCCGGCAAAGACTGGTTCTTGGCTTTTAAAAAACGTCATGGATTATCCGTCAAAAAGCCGCAAGCTGTAGAGTACGCGCGTAAAAGGGTTATGGACCCGTTTATTATCTACCCCTATTTTGATCTTCTGGAAAAGACAATAAGCGATTTAAATTTGACTCATAAGCCGTCGTGCATCTGGAATCTCGATGAAACGAGCTTTTCGAGAGACCCGTCTAAAACTAAAATTGTTGGTGCAAAAGGTTATGCAGCAACGAGAGTTATCTCTTCAGCTGGTAGAGATAATACTACAGTGTTACTTGGTGCCAGCGCTTCAGGAGAAAAGACACCGCCTCTGATTATCTATAAAGGGAAAAATGTATGGGACACTTGGACTTCTTCCGAAGCGTATCCGGGCACATCTTATGCGGCAACAAAAAACGGTTGGATGGAAACAGACGTGTTTGAGTCGTTCTTCAAGAAAACTTTTTTGCCTGCTGTCCAAGACCAACGCCCGGTGCTCCTTATATATGATGGGCACTCCACACACGTAGGGCTGCATATTATTGAAGAGGCTCgcaaagaaaatataacaattttgaAATTGCCACCGCACTCTAGTCACATTTTACAACCACTTGATATTGCAGTGATGAAGCCGTTTAAAGATCGCTGGGATGCTTTATTGGTGAAGTGGCAGCGGTTGAACGTAGGGAATGTTATGCCAAAAAGTGAGTTTGCTAAACTAGTTGGACAAATATGGGCTGAAATAGATCCACAAGTGCTACGTAATGGATTCAGAAAAGCTGGTATACACCCTATAAATCGCGAAGAGATAAAAGAAAACCAGTTCGATAGCTTAAAACTAAGACATTGGAGAGAAtacgaaaataaacaaaatgaaaatgacaACACAATAAAGAGGAACCCAAAAAGTTTGCTGACgctaacattaaatttttacaataaaacccCGATACACAAAAACcctgaaattttaaaagaaattaccTTCCATAATAAACCTTTGGAAACTACTACACGAGATCATAACATTACATTCGAAGAACTACTTCTACAAAAAGTGAGACGTGGTGATAGTTCACCTAAACCACGGCGACGAAAGGTAGCACCGGGTGCTGAAGTCATAACTCACAATGATGTTTTGGAAAGGAAGCAGGAAGAATATAGAAAACAAGctaaaacaaacacaaataagAATCTGACAAGAGGTAAAGACGCACAATCGCAATCTCCTAAAACTACCAATGATGTTGTTTACTTGACGAATGTTTCAAAAAACGATTGTCAATTGCGCCCTTTTGCAGTAAAAGACGTAAGTAACCTACCTCCTTGCTTACAGAGCGACAAATCGAATtctcctaaaataaatataatttctaatatattaattaaacaaccCAATACCGAAAAAGaccaaaacattttcaaaactaaaaaccaaaaatattacaagactACTAAACCGACAATACcgggtaaagaaaataaagttttacaaagCAAGATACAATTACGCAAAGACATAAAACCAGCAAAAAAGCAAAATGATACTAAGGTTTTGAATACTAAATTTCAACAGTATAAAAAGGCCGAACAATCCAGTAAACGGAAAAATAAGACTTTCGACTCTACAAACATCTACGAAAACCCTAAACCCCGATCATCGGGACTTTGTAAATCCAAATATAGACGTCCTTCTTCATCTTCAACTACCAGCGTTTCCGGTTCAATTAGTGACTATGGCGATTCAGATATAGTATCAGATAGTTCTATTTTAATAGATGAAGACGATGAAAATAACCATGACACATTACCACAAACTTTAAATATACAATCGATAAATGAGTTTACACCCGTCGTAGATCATGATAATGAAAAACATGAAATCCGCATGTATCATTCCGGGGACGATGTCTTAGTAAGATACCATATCAGACAAAAATGGACGTATTACGTCGGGcgaattgaaaatattaaaataaaggaGGATGAACTATTTTACACAACACgattttacaaaacaattaagAAACCAGAACTAACACTTAAAATGACAAAGAAAATCGATAGGGATGATGTTCCTGAGATATTAatagtgaaaaaagttgatttaACACAAGACCCTATAACACTGAATTACTTTTTTGTGAATGATGACAATTCGATTTACTTTTAA
- Protein Sequence
- MGKYQRKTKRGSYSKEKLREAVQEVENGKMSGYRASKTYQIPRMTIMDHVKKRRGKSTTLGRNTAISPDIEYKLAKSLHLMEKNGFGLSRTEVLEMVRDYVSRNNLITPFKNCTPGKDWFLAFKKRHGLSVKKPQAVEYARKRVMDPFIIYPYFDLLEKTISDLNLTHKPSCIWNLDETSFSRDPSKTKIVGAKGYAATRVISSAGRDNTTVLLGASASGEKTPPLIIYKGKNVWDTWTSSEAYPGTSYAATKNGWMETDVFESFFKKTFLPAVQDQRPVLLIYDGHSTHVGLHIIEEARKENITILKLPPHSSHILQPLDIAVMKPFKDRWDALLVKWQRLNVGNVMPKSEFAKLVGQIWAEIDPQVLRNGFRKAGIHPINREEIKENQFDSLKLRHWREYENKQNENDNTIKRNPKSLLTLTLNFYNKTPIHKNPEILKEITFHNKPLETTTRDHNITFEELLLQKVRRGDSSPKPRRRKVAPGAEVITHNDVLERKQEEYRKQAKTNTNKNLTRGKDAQSQSPKTTNDVVYLTNVSKNDCQLRPFAVKDVSNLPPCLQSDKSNSPKINIISNILIKQPNTEKDQNIFKTKNQKYYKTTKPTIPGKENKVLQSKIQLRKDIKPAKKQNDTKVLNTKFQQYKKAEQSSKRKNKTFDSTNIYENPKPRSSGLCKSKYRRPSSSSTTSVSGSISDYGDSDIVSDSSILIDEDDENNHDTLPQTLNIQSINEFTPVVDHDNEKHEIRMYHSGDDVLVRYHIRQKWTYYVGRIENIKIKEDELFYTTRFYKTIKKPELTLKMTKKIDRDDVPEILIVKKVDLTQDPITLNYFFVNDDNSIYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01377415;
- 90% Identity
- iTF_01377415;
- 80% Identity
- -