Sbel009994.1
Basic Information
- Insect
- Sturmia bella
- Gene Symbol
- -
- Assembly
- GCA_963662145.1
- Location
- OY759170.1:3320996-3325134[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.032 2.1 9.4 0.4 3 23 187 207 185 207 0.91 2 15 0.19 13 6.9 3.8 1 23 213 235 213 235 0.95 3 15 1e-05 0.00067 20.4 0.8 1 23 286 308 286 308 0.98 4 15 2.2e-05 0.0015 19.3 0.3 1 23 421 443 421 443 0.96 5 15 0.03 2 9.5 0.8 1 23 449 471 449 471 0.94 6 15 4.4e-06 0.00029 21.5 0.5 1 23 488 510 488 510 0.98 7 15 0.0014 0.091 13.7 0.6 1 23 519 542 519 542 0.95 8 15 0.00091 0.06 14.2 4.9 1 23 548 570 548 570 0.98 9 15 4.9e-05 0.0032 18.2 0.3 2 23 577 598 576 598 0.97 10 15 2.4e-08 1.6e-06 28.6 0.7 1 23 604 626 604 626 0.96 11 15 0.002 0.13 13.1 1.3 1 23 632 654 632 654 0.98 12 15 4.4e-05 0.0029 18.4 1.6 1 23 660 682 660 682 0.96 13 15 1.4e-05 0.00093 19.9 3.2 1 23 688 710 688 710 0.99 14 15 2.4e-06 0.00016 22.4 0.7 1 23 716 738 716 738 0.99 15 15 5.7e-05 0.0037 18.0 0.4 1 23 744 766 744 766 0.97
Sequence Information
- Coding Sequence
- ATGTCCAGTGAATTGAGCTCCAAATGCCGCACTTGCCTAAGTGAATCAAGTAGTTATCATCAATTATTTGATTATGTGGATGATAATTATAAAATCCTAGAAATGTTGGATTGTATAGTGCCCCAAATTGGTGTAAAGACGGCATCGCAACTTTCTTCTTTGGTGTGTCCGATCTGCGTTGAAAAATTGCTTATTGGatataaatttcaacaattgtGTATAGAAACCAATAATCGGCTTCACAACCTACTTGGGATTGCAGTGTTTGAGACCGAACCAAAATTGGAGAAAATAGTGGATCCGCTAACTGCTGAGTCAAACATAAAGCTAAAGGAAGAAATAGAGGAGCCATGCTTTGAGTCGGAAATTCCAAGTGAAAGTATGGATGAGGTAACTAAGTCAGAAACCGGAAGGATTCTGGATGATAGTGAAAGTGATTCAGATTCAAGCAATGAAAAGCTATCTATCTTGAAGGAAAGGTCAGAACAGAAGCTTCAtctaaaagaagaaaactttGAAAGccCGTCCAAACTGATTCGTCGTAAGGGTTCCTTTCTGTGTATTGAATGTGGGAAGAATTTTAGTAGTATAAATCGTCTTAAGCAGCATACAGCTATACATGATAAAAAGCGTGCTTTTTTATGTCGAACTTGCAATAGTTGCCTTAAatctgaaaaattgtttaaagctcATATGTTAACGCACAGATGCTCCTCATCCAAAAATTTGCCACACGACAACATTATTGATGATAATAAGGACTGCAAAAGTATTTTCCAGAATATTCCGGTTGATGGTCTTAAGCCTGACAGCACTGAAGAAGTTCAAAACAAGGATTCCAGCGAGCACTTAACATTTCAATGTCCCGATTGTccaaaattttttgagaaaaaagctTCATTTTCTGCACATTACAAAGTTCATAAGAAAAAAGaaccatttaaaattaaaaacaaaagtttcgaGAATGATTTTGAAGATATTAAGAGAGTTgatttgccaaatattttgcaagagAAGGTGAATGAAGTTACAGAACAAAATTCTAAGGCGGTTGTAAaagaagaaatagaaataacacCCCAAATATTCGATACTGGTCGTGATTGGTTTAGCATTGATTATGAAAATTCTgaTGGCAATTCAGAagatgaaattttttctaagtCTGGAGCAAcggaatttaaaaatgttgattttgttGACACCGGCATCGGTGAGGTTGAAAAGCCTAACAGCAGTAACAAAAGAAACGGTAGTTTTCCCTGTGATGTCTGTGGGAAAATTTTCGATCGCCCATATCGTTTAAAAAGGCACAGTTCGGTTCATTCTCTTGCTAGACCGCATGAGTGTGGAATTTGTAAATACCGTTTTGCCACTGCTAACATCCTTAAAGCTCATTTATTTCAACACACAACCGATTCAGGGGGAACTTTTCACTCACAATCACGACCCGAAGGCTTTAAATGTCCCGACTGTCCTAGGCGCTTTGAAAAGCAAGCTTCACTTTCAGCTCATCGACAAAGTCACACACGAAATACCTCGGAAGCTAATTATCCTTGTACGGTATGTCAACGAAGTTTTATGTCAATAAGATCCTTAACTGAACATATAACAAACAAACATCCCGAAGTTGAAAAACACAAATGTGATCAGTGCGACAAAACGTTTATCTTGCACGCCCATCTTGTAGAGCATTTAAACCGTCATAAAGGTAACAGAAATTTAGTTTGTCTAATATGTGAAAAAGAGTTTGGATATAACAACACATTAAAAGAGCATATGCGAACGCATAGTGGAGAAAGTCCTTATCTTTGTCCGCAATGCGGCAAAACGTTTCGCAGTGCGAGCAATTTGCGTCAGCATATGGAAAGACATACGGGCTTAAAAAAATACCAGTGTCCAGAGTGCCCCAGTCGTTTCAACTGCAGATCAGATCTTATAAAACACGCCTCGACACATTCGAATGCAAAGCCTCATGTCTGTGATATTTGTGGCTCACGTTTTACCAGAGCATATTCGTTGCAAAAGCACAAATTGCTACATTCGGGTGAAAGGCCCTTTAAGTGTGACCAATGCAATATGACATTTGCCATTATTTATCACCTGCGCCGTCATATGCGGACCCATACAGGAGAGAAGCCTTACAAATGCAAATACTGTGAACGAGCTTACGCAGAAAGCGGTGATTTAACGAAACATTTAAGGACACATGTTGGGGAAAATACCTATATGTGTGATCAATGTCCCATGGCATTTAAATATCAAGCTGAATTACGTCAACATCAATCACAGCATTATAAAATGGCCCAAAAGCTTTTGCAACAAGCACAGAAAATGTCTGAAGATGCAGAACATGAAATAAATGAACACCAGGAACTTGAAGACCAACAAAatttgcagcaacaacaaacgcaGATGCCCTTACAAGAACAACGGCAACTTGACCAACTACTAATGAAGCCTGCACAAATTCCACTTTTTTCAATGGGAATATCGAGCTATCAGCAACTACCGCTAATGgaacatgccacacaacttaCTACAATAGTTGACCAAACGCAACATCTTTCAAAGGCTGAAGATATTATTGTAGCTCAGCAGCAAGAGAACGTGAATATAAAGAATCTCAGTAATTGA
- Protein Sequence
- MSSELSSKCRTCLSESSSYHQLFDYVDDNYKILEMLDCIVPQIGVKTASQLSSLVCPICVEKLLIGYKFQQLCIETNNRLHNLLGIAVFETEPKLEKIVDPLTAESNIKLKEEIEEPCFESEIPSESMDEVTKSETGRILDDSESDSDSSNEKLSILKERSEQKLHLKEENFESPSKLIRRKGSFLCIECGKNFSSINRLKQHTAIHDKKRAFLCRTCNSCLKSEKLFKAHMLTHRCSSSKNLPHDNIIDDNKDCKSIFQNIPVDGLKPDSTEEVQNKDSSEHLTFQCPDCPKFFEKKASFSAHYKVHKKKEPFKIKNKSFENDFEDIKRVDLPNILQEKVNEVTEQNSKAVVKEEIEITPQIFDTGRDWFSIDYENSDGNSEDEIFSKSGATEFKNVDFVDTGIGEVEKPNSSNKRNGSFPCDVCGKIFDRPYRLKRHSSVHSLARPHECGICKYRFATANILKAHLFQHTTDSGGTFHSQSRPEGFKCPDCPRRFEKQASLSAHRQSHTRNTSEANYPCTVCQRSFMSIRSLTEHITNKHPEVEKHKCDQCDKTFILHAHLVEHLNRHKGNRNLVCLICEKEFGYNNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCNMTFAIIYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSQHYKMAQKLLQQAQKMSEDAEHEINEHQELEDQQNLQQQQTQMPLQEQRQLDQLLMKPAQIPLFSMGISSYQQLPLMEHATQLTTIVDQTQHLSKAEDIIVAQQQENVNIKNLSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00655465;
- 90% Identity
- -
- 80% Identity
- -