Esuc010328.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- -
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000042.1:151260-154414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00021 0.013 16.0 0.1 1 23 186 208 186 208 0.96 2 15 0.00029 0.019 15.5 0.7 1 23 214 236 214 236 0.96 3 15 2.7e-06 0.00017 21.9 0.4 1 23 277 299 277 299 0.98 4 15 3.5e-06 0.00023 21.6 0.3 1 23 412 434 412 434 0.96 5 15 0.013 0.87 10.3 0.9 1 23 440 462 440 462 0.94 6 15 3.6e-06 0.00023 21.5 0.5 1 23 479 501 479 501 0.98 7 15 0.0011 0.073 13.7 0.6 1 23 510 533 510 533 0.95 8 15 0.00059 0.038 14.6 4.9 1 23 539 561 539 561 0.98 9 15 3.9e-05 0.0026 18.2 0.3 2 23 568 589 567 589 0.97 10 15 2e-08 1.3e-06 28.6 0.7 1 23 595 617 595 617 0.96 11 15 0.0016 0.11 13.2 1.3 1 23 623 645 623 645 0.98 12 15 3.6e-05 0.0023 18.4 1.6 1 23 651 673 651 673 0.96 13 15 3e-05 0.0019 18.6 3.2 1 23 679 701 679 701 0.99 14 15 9e-06 0.00059 20.3 0.8 1 23 707 729 707 729 0.99 15 15 4.6e-05 0.003 18.0 0.4 1 23 735 757 735 757 0.97
Sequence Information
- Coding Sequence
- ATGTCCAGTAATCTAAGCTCCAAATGCCGCACTTGCCTGAGTGATTCAAGTAGTTATCATCAGCTGTTCGATTATGTAGAGGAAAATTATAAAATCCTGGAAATGTTGGATTGTATAGTGCCTCAAATTGATGTTAAGACGGCATCGCAGTTTTCTTCTTTGGTGTGTCCTATGTGCGTTGAAAAATTGCTAATTGGATACAAATTTCAACAGCTGTGCATAGAAACTAATAATCGACTTCATGACTTACTGGGGATAGTTGTGTTTGAAACCCAACCTAAGTTGGAGAAGGTATTGGATCCGTTAACAGCCGAGTCAAATCTTAAATTAAAGGAAGAAATAGAAGATGCATGTTTTGAATCAGAAATGCCAACCGAGGATTTAGATGAGGGAACTAAGTCAGAAAATGCAAGAATTCTGTATAATGGGAGCGGAAGTGATTCCGATTCAAGCAATGAAAAGTTATCTGTCTTGAAGGAAAGATCAGAACAAAAATTTCACTCAAAGGAAGAACACTTGCAAAGGCCATCCACACAAAATCGTCGTAAGGGTTGCTTTCCTTGCACTGAATGTGGAAAAATTTTTAGTAGCATAAATCGGCTGAAGCAACATGCCGCTATACATGACAAAAAGCGGTCATTTTTATGCCAAATTTGTAATACTAGTGTTAAGTCAGAAAAAAATTTTAGTGCCCATATGTTAACGCACGTAGACAAAAATGTTGAAAATAACAACAGCAAAAGTATTGACCGGAGGGCATCAGCTGATGAATTTAAGTCTGAAGGACCTGAAAATGTTCAACACAAAGCCTCAAAAGAACTATTAAGTTTTCAATGCCCAGACTGCCCGAAAGTTTTTGAGAAAAAGGCTTCTTTTTCCGCCCATTACAAAATTCACAAGAAAAAAGAATTGTTTAAAAATAAAAACAAAATTTTGAAGCCTGACTTGGAAGATATGAAGAAGTTTGATTTGGGAAATATTTTGGAAGTGCAAACGAGTGATGTTACTGCCAAAATTTCAAAGGCGCTTGTAAAAGAAGAAATAGAAATAACGCCTCAAATATTTGATACTGGTAGTGATTGGTTTAATAATGATTATGAAAATTCTGAGGGCAATTCAGAAGATGAGATTTTTTCTAAACCTGGAGGAAGGGAGTTTAAAAATACTGACTTCGTTGATACCGGCATAGGAGAAGTTGAAAAGCCTAATAGCAGTAACAAAAGAAATGGTAGTTTTCCTTGCGATATCTGCGGCAAAGTATTCGATCGTCCATATCGCTTAAAAAGACATAGTTCGGTTCATTCTCTTGCCAGACCACATGAGTGCGAGATTTGTAAATATCGTTTCGCCACTGCTAATATTCTCAAAGCTCATTTGTTTCAACACGCTAACGATACGGGCGGAAACTTTCATTCGCAAACACGACCCGAAGGTTTCAAATGTCCCGACTGTCCTAGGCGTTTTGAAAAGCAAGCTTCACTGTCAGCTCATCGACAGAGTCACACACGTAATACCTCAGATGCGAATTATCCTTGTACGGTGTGCCAGCGAAGTTTTATGTCAATAAGATCCTTAACCGAACATATCACAAATAAACATCCCGAAGTTGAGAAACACAAATGTGATCAATGCGATAAAACGTTTGTTTTGCATGCCCATCTTGTGGAGCATTTAAATCGTCACAAAGGTAACAGAAATTTAGTGTGTCTAATATGTGAAAAAGAGTTTGGGTATAACAACACATTGAAAGAACATATGCGTACACATAGTGGTGAAAGTCCTTATCTTTGTCCTCAATGCGGTAAAACGTTTCGCAGTGCGAGCAATTTACGGCAGCATATGGAAAGACATACGGGCTTAAAAAAATACCAGTGTCCAGAGTGCCCCAGCCGTTTTAATTGTAGGTCAGATTTAATAAAACATGCATCAACACATTCGAATGCAAAACCTCATGTCTGTGATATTTGTGGCTCACGTTTCACCAGAGCATATTCGTTGCAAAAGCACAAACTGCTACATTCGGGAGAAAGGCCTTTCAAGTGCGACCAATGCAGTATGACCTTTGCCATAATCTATCACTtgcgccgtcatatgcgaacccatacaggagagaaaccttacaaatgcaaattctgtgaacgagcttatgcagaaagcggagatctaacaaaacatttaagaacgcatgtcggagaaaacacgtatatgtgcgatcaatgtcccatggcctttAAATATCAAGCTGAATTGCGGCAGCATCAATCACAACATTATAAAATGGCACAAAAACTTTTGCAACAAGCACAAAAAATGTCTGAAGATGCACAACATGAAATAAACGAACTACAGCAACAAGACCAACAAAATTTGCCGCATCAACAACACCAAACTCAAATGCCTTTACAAGAACAGCGGCAACTGGACCAGCAACTAATTAAACCTACACAAAATCAACATTTTCCAATGGGATTATCGAGTTATCAGCAAATACCGTTAATGGAAGATACAGCAGAACTTGCTCCAATAGTACACCAAACACATCATTCAAAAGGTGAAAATATTGCAGCTCAGCAGCAAGAGAATTTAGATATTAAGAATCTCAGTATATAG
- Protein Sequence
- MSSNLSSKCRTCLSDSSSYHQLFDYVEENYKILEMLDCIVPQIDVKTASQFSSLVCPMCVEKLLIGYKFQQLCIETNNRLHDLLGIVVFETQPKLEKVLDPLTAESNLKLKEEIEDACFESEMPTEDLDEGTKSENARILYNGSGSDSDSSNEKLSVLKERSEQKFHSKEEHLQRPSTQNRRKGCFPCTECGKIFSSINRLKQHAAIHDKKRSFLCQICNTSVKSEKNFSAHMLTHVDKNVENNNSKSIDRRASADEFKSEGPENVQHKASKELLSFQCPDCPKVFEKKASFSAHYKIHKKKELFKNKNKILKPDLEDMKKFDLGNILEVQTSDVTAKISKALVKEEIEITPQIFDTGSDWFNNDYENSEGNSEDEIFSKPGGREFKNTDFVDTGIGEVEKPNSSNKRNGSFPCDICGKVFDRPYRLKRHSSVHSLARPHECEICKYRFATANILKAHLFQHANDTGGNFHSQTRPEGFKCPDCPRRFEKQASLSAHRQSHTRNTSDANYPCTVCQRSFMSIRSLTEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHKGNRNLVCLICEKEFGYNNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIIYHLRRHMRTHTGEKPYKCKFCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSQHYKMAQKLLQQAQKMSEDAQHEINELQQQDQQNLPHQQHQTQMPLQEQRQLDQQLIKPTQNQHFPMGLSSYQQIPLMEDTAELAPIVHQTHHSKGENIAAQQQENLDIKNLSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01376795;
- 90% Identity
- -
- 80% Identity
- -