Ssin025297.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- stc
- Assembly
- GCA_954870665.1
- Location
- OX940879.1:96495015-96498220[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.92 3.8e+04 -4.0 1.6 15 19 308 312 307 312 0.81 2 13 0.033 1.4e+03 0.6 0.2 4 10 341 347 340 349 0.93 3 13 1.5e-05 0.6 11.3 18.1 4 19 355 370 353 370 0.93 4 13 9e-06 0.37 12.0 13.8 3 19 408 424 406 424 0.91 5 13 3.9e-09 0.00016 22.7 14.3 1 19 464 482 464 482 0.98 6 13 6.5e-05 2.7 9.3 17.0 4 18 530 544 523 545 0.88 7 13 0.015 6.3e+02 1.7 11.1 1 11 585 595 585 607 0.91 8 13 2.2e-10 9e-06 26.8 15.5 1 18 612 629 612 630 0.97 9 13 1 4.1e+04 -4.5 0.8 6 10 659 663 659 664 0.74 10 13 0.32 1.3e+04 -2.5 11.7 10 18 677 686 666 687 0.79 11 13 9.4e-08 0.0039 18.3 16.9 1 16 723 738 723 748 0.87 12 13 4.6e-06 0.19 12.9 12.0 4 19 757 774 755 774 0.93 13 13 0.51 2.1e+04 -3.2 1.7 8 12 790 794 783 794 0.65
Sequence Information
- Coding Sequence
- ATGTCGAGCTACACGTCGCCGTCCAATCAGGACGACCGCAACACGAACGGCTACGTGGATTTCAACCAGTTTCTGCGACAACACAATTATCTAGAGACTAACGCATTCGGGCCACGATTCGATTTCTATGATCAACTCTACAGTCAGGTGCCTTACTTGCCGGATGGCTTCAACCTGTTTCAGCCGCAACCGAGCACGAGTTCGACGGTTGGccaacagcaacagcagcttgcgAGCACTGATCTTGCAAGCAACTCTACTTTGGAACCTACAGCTGCTGAATTCATTCCACGCTTTAATAATTTGAGCTTGAATAAAACGCAGCCACAAGTCGATTTTTCGTTCGAGGCTGGCGACAGTGCATCGGTTGACAACAGGAAGCCGCAGGTATCGAGTGTGGCGCAGAACGAGAATGGGCGCGATCGCAACTCGCACAAGAACCGCAACACCGGAGCGATTAGCAAGCGCAACCATGGACGCAACCAGTACTACGATCAGCAGAGGTACGAGCGCAACAACAACGCCAATAGCAATGGCAATTGGTCAGAAAATGGCACCGGACGCAATAACCGTCGTCGGGACACTTGGCGAAATTACAAGGACAACAAGTCGTCGCCGCAGAAGAAGCATTCAGATGTGAGCGCCGACAATTCGCCGAAGCACTCGAACTCTAGTTTGGATGGCGAAACGGTATCACAATCCACGCCACGATTCTCGGATGCCAGTGTTGAAACTCAAAAGTGCTCCCAAAGGGACAAACTGATTCGAGAAATTGAGGCGCGCAAGTTGGAATGTCTCGTTTGCGTGGAACCCATTAAAGGCCACCAATCGGTGTGGTCGTGTCTAAACTGTTACCACATTTTGCATTTAGCTTGCACAACCAAGTGGGCCTCGAGCTCGAAATCGAACGATGGCTGGCGCTGTCCCGCATGCCAGAATGTCACCAAAACCATTCCTCGCGAGTATTATTGCTTCTGCGGCAAAGTCAAGAACCCATCATACAATCGCAACGAAATCGCGCATAGTTGCGGCGAGCCATGTGGTCGCAAGGATCTGTGTCCACATCCTTGCACTCTGCTATGCCACCCGGGGCCGTGTCCTCCTTGTCAAATTATGGTGAAGCGTGAATGTGGCTGCGGAAGGAGCACCAAACTAACGCAGTGTTGCATTCGTGAGGACATCGAGTGCGGTAGCAAGTGTGAGAAACTATTGAATTGCGAGCTGCATGAATGTGGAGAAAGCTGCCACAAAGGCAAGTGTCCTAGCTGCAAGCACAAGGTCGATCAGCAGTGCTACTGCTCGAAGGTGAGTCGTCAGGTAGCGTGCACGCGGGAATCGAATGAGAAAAAGCAGTTCTCGTGCGGCAAACCTTGTAATAAATCGTTGGGCTGTGGTAATCATAAATGCAAGGATAACTGCCATGCCGGCGAATGTAAGCCGTGCAAGCTTACGCCGGAAGTGGTTACGGCATGTCCATGTGGAAAAATGTCAATTAAGGTGGACGAGAGGACGTCTTGTTTGGACCCCATTCCAACTTGTACTGGAGTTTGTGGAAAGACACTCAAGTGTGGGCCACCAGCCACACCCCATCATTGTACTAGCCAATGCCATACAGGCAACTGTCCACCTTGCAACAAGCAAACTGCTGTCCGATGTCGTTGCGGCAACATGGACCAGATGATCAAATGCCGACAGTTAGTGACGCGAGCCGACGATGCGCGTTGCAAGAAGCGATGCATAAAGAAACGAAGTTGCGGGAAGCACAAATGTGCACAAGAATGTTGCATCGATATCGATCACATCTGCCCGATGCCTTGCAACCACACTCTGTCGTGCGGCAAGCACAAATGTGATCAGCCCTGCCATCGCGGCAATTGTCCACCTTGCTACAGAAGCTCGTTCGACGAGTTGTACTGTGAATGCGGCGCAAATGTGATCTATCCGCCCGTTCCGTGCGGGACTAAACGGCCCGTGTGCAAGAATCCTTGCACGCGCCAGCATGCATGCGATCATCCCGTGCAACATGATTGCCATTCGGGACCGTCATGTCCGCCATGCATCGTTCTCACGACGAAATACTGTTTCGGGAAGCACGAACAACGCAAAACGATTCCGTGCAATCAAGCGAGCTTCAGTTGTGGACTGCCGTGTAACAAAGATTTGAGCTGTGGTCGTCACAAATGCATTAAACCATGTCATGAGGGGCCGTGCCAAGGTCCTGGCGAAGTCTGCAAACAAAGTTGCCAACGACAGAGAATCACTTGTGTCCATAAATGCTTGACTCCGTGTCATGATGGCGATTGTCCTGATAATCCGTGTCGAGAGACGATTGAAGTAACATGCGAGTGCGGTCATCGCAAGCAAACGCGCACTTGCCACGACTTTTCGAGGGAATATCGTCGGATTGCAACTGCTCAACTAGCCTCGTCTATGAGAGAGATGCAGCGAGGTAACACCGTCGAACTGAGTGACATCCTGGGACCGGTCAAAGTGACAAACAACAAAACTCTGGAGTGTAACGAGGAGTGCAAAATACTCGAACGTAATCGTCGTTTGGCAATTGGCCTACAAATTCGCAATCCTGATTTGCAATCAAAACTCTCGACGCGCTACTCGGACTATATTAAAAGTTGGGCGAAAAAGGATCCGCATTTAGTGAAAATGATCCACGAGAAACTCACCGAGCTAGTGAAGTTGTCCAAGGAGAGCAAGCAAAAATTCCGCAGTCATTCGTTCCCGACAATGAATCGTGAAAAGCGTCAACTTGTTCATGAGATGTGCGGAATGTTTGGGGTGGACTCGGTGGCGTATGATGCGGAACCGAATCGCAATGTTGTGGCAACAGCACATAAGGAAAGGTCTTGGCTTCCGGCTATGAGCATTATGGAGATGATGGAACGTGAGAGCGGACAACGGCGTGTACCCGTGCCAAATAACAATGCTTGGGGTGGGAAGAAATGA
- Protein Sequence
- MSSYTSPSNQDDRNTNGYVDFNQFLRQHNYLETNAFGPRFDFYDQLYSQVPYLPDGFNLFQPQPSTSSTVGQQQQQLASTDLASNSTLEPTAAEFIPRFNNLSLNKTQPQVDFSFEAGDSASVDNRKPQVSSVAQNENGRDRNSHKNRNTGAISKRNHGRNQYYDQQRYERNNNANSNGNWSENGTGRNNRRRDTWRNYKDNKSSPQKKHSDVSADNSPKHSNSSLDGETVSQSTPRFSDASVETQKCSQRDKLIREIEARKLECLVCVEPIKGHQSVWSCLNCYHILHLACTTKWASSSKSNDGWRCPACQNVTKTIPREYYCFCGKVKNPSYNRNEIAHSCGEPCGRKDLCPHPCTLLCHPGPCPPCQIMVKRECGCGRSTKLTQCCIREDIECGSKCEKLLNCELHECGESCHKGKCPSCKHKVDQQCYCSKVSRQVACTRESNEKKQFSCGKPCNKSLGCGNHKCKDNCHAGECKPCKLTPEVVTACPCGKMSIKVDERTSCLDPIPTCTGVCGKTLKCGPPATPHHCTSQCHTGNCPPCNKQTAVRCRCGNMDQMIKCRQLVTRADDARCKKRCIKKRSCGKHKCAQECCIDIDHICPMPCNHTLSCGKHKCDQPCHRGNCPPCYRSSFDELYCECGANVIYPPVPCGTKRPVCKNPCTRQHACDHPVQHDCHSGPSCPPCIVLTTKYCFGKHEQRKTIPCNQASFSCGLPCNKDLSCGRHKCIKPCHEGPCQGPGEVCKQSCQRQRITCVHKCLTPCHDGDCPDNPCRETIEVTCECGHRKQTRTCHDFSREYRRIATAQLASSMREMQRGNTVELSDILGPVKVTNNKTLECNEECKILERNRRLAIGLQIRNPDLQSKLSTRYSDYIKSWAKKDPHLVKMIHEKLTELVKLSKESKQKFRSHSFPTMNREKRQLVHEMCGMFGVDSVAYDAEPNRNVVATAHKERSWLPAMSIMEMMERESGQRRVPVPNNNAWGGKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00793952;
- 90% Identity
- iTF_01089680;
- 80% Identity
- -