Ssin017850.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940878.1:132936615-132938090[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0084 1.2e+02 4.1 0.6 6 20 103 117 100 121 0.85 2 10 0.0035 49 5.3 0.1 21 46 208 233 202 239 0.82 3 10 0.05 6.9e+02 1.6 0.1 22 49 237 263 230 266 0.78 4 10 0.00019 2.7 9.4 0.5 18 45 260 287 252 295 0.86 5 10 0.42 5.8e+03 -1.3 0.1 21 43 291 313 287 317 0.85 6 10 0.0008 11 7.4 0.0 21 47 319 345 311 352 0.83 7 10 0.0003 4.1 8.8 0.1 21 45 375 399 361 407 0.87 8 10 0.22 3e+03 -0.4 0.1 21 44 403 426 399 435 0.84 9 10 0.015 2e+02 3.3 0.3 19 44 428 454 420 462 0.81 10 10 3.6e-05 0.49 11.7 0.2 23 51 461 489 455 491 0.88
Sequence Information
- Coding Sequence
- ATGCTTGAAATGAAAAGTATCCTGTTGGCAGACTTCATGGCGGATAGTTGCAGTCTTTCAGCTGGCGAGGAAAGTCGCGACTCAAACTTTGAAATGACTGAAGATCAAATCCTCACTGCTGATCAAATCAAAAAGGAGCCGGAATTCATAATCGACGACGACGAGGAAAACGAGAAAATGATTCAGTACATGCGAGACAACAACTTGGACGATAAGGCCAAGGATGATCTCGAATGGCACAGTTGTATTGTTTGCGAAGAGCGGTTTCTGGATATTGAGGATCTGTCGCTTCACGTTCAACAGCATGTGAAAAATGAGCCAGGACGCGAGAAGCCGATGAGCAAATCCAAAAGAAGAAAGTACGGCATCCGTTCGAAGTTCACCGGTTTCAGCAGGGAGGAACTGTTCCGGGATTATGTGAAGGTGAAAGTGAACTTGGACGGGGACGCTAGTTACACATGCAAACTATGtactgaaaattgtttattctaCACTCTGACTGCCATTCGCAATCACATGCGCATCCACGAGAATCCCGTGTACAAGGACCGAAACTGTACCGTCTGCCATAGGACTTTCCTGCGCCGTGACACACTCCTAGTCCATATGAGGACGCACACTCGCGAGCGCCCTTTCAGCTGTGATATTTGCAATGCTACGTTCGCACATTCCAGTTCTCTAGTCTCGCACAAGCGAATCCACAGCGGTGACAAACCCTTCAAGTGCGACGTGTGCCATCTGCGATTCCGCGAGTCGGGGCAGATGTCGGCCCATCGTCGCACtcactttgaaaaaacattcCAATGTCCGCAGTGCAAGCAGTTCTACTCGTCATCGAAAAATTTACGCGCGCATCTTCGGACCCACACAGGTGAAAGGCCTTACAAATGTGACCAGTGCGACAAATCGTTTCGCACGTCCACTGCACTAACGCTGCACGGCCGAGTGCATTCCGGCGAAAAGCCGTACAAATGCAACATTTGCGGATTCGCCACCAAACAGTCAGGATGCCTGAAAGCGCACATGCGAACTCATACTGGCGAAAAACCCCATAAATGTGATCTCTGCGACCGCGCGTACTCCGAAAAGAAACGACTGGTCACACACTATCGCACGCATACGGGCGAACGGCCGTACAAATGTCCTTTTTGCGAGTCGGCCTTCATCCGAAGCGACAACCTGAAGACGCACGTTCGCACGCATACCGGCGAACGGCCGTTCAAGTGCGAAAGCTGCGATAAGAAATTCGCACAGAAGACAACACTAAGGACGCACCAAAGAACGCATTCGGGCGAAAAGCCGTACGAGTGCAAATACTGTAAGCAGCGCTTCCGACAATCAGGAATCCTCATTACGCATATTCGAACGCACGACGGCACCGCACCGTACCAGTGCCAACTGTGTGATCGCGCCTTCAAGCAAAATGGCAACTTGCGACGACACTATCAGGTTGACCACAATGGAGACCCGTACTAG
- Protein Sequence
- MLEMKSILLADFMADSCSLSAGEESRDSNFEMTEDQILTADQIKKEPEFIIDDDEENEKMIQYMRDNNLDDKAKDDLEWHSCIVCEERFLDIEDLSLHVQQHVKNEPGREKPMSKSKRRKYGIRSKFTGFSREELFRDYVKVKVNLDGDASYTCKLCTENCLFYTLTAIRNHMRIHENPVYKDRNCTVCHRTFLRRDTLLVHMRTHTRERPFSCDICNATFAHSSSLVSHKRIHSGDKPFKCDVCHLRFRESGQMSAHRRTHFEKTFQCPQCKQFYSSSKNLRAHLRTHTGERPYKCDQCDKSFRTSTALTLHGRVHSGEKPYKCNICGFATKQSGCLKAHMRTHTGEKPHKCDLCDRAYSEKKRLVTHYRTHTGERPYKCPFCESAFIRSDNLKTHVRTHTGERPFKCESCDKKFAQKTTLRTHQRTHSGEKPYECKYCKQRFRQSGILITHIRTHDGTAPYQCQLCDRAFKQNGNLRRHYQVDHNGDPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01376062;
- 90% Identity
- iTF_01376062;
- 80% Identity
- iTF_01376062;