Ssin037059.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940881.1:95593193-95594913[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.51 7e+03 -1.6 0.1 26 40 9 23 5 26 0.57 2 7 0.027 3.8e+02 2.5 0.3 10 46 188 224 179 230 0.79 3 7 4.7e-05 0.64 11.3 0.1 22 44 256 278 251 286 0.86 4 7 0.053 7.4e+02 1.5 0.0 21 44 283 306 279 310 0.85 5 7 6e-06 0.082 14.2 0.0 20 43 310 333 294 338 0.84 6 7 0.011 1.5e+02 3.7 0.0 16 46 334 364 332 369 0.89 7 7 0.017 2.3e+02 3.2 0.0 20 34 394 411 390 421 0.75
Sequence Information
- Coding Sequence
- ATGGCGGGTGGACAAACGGAAAACATTTGCAGAACATGTTTAGCAGAAACGAGGGATTTACGATCGCTTTTTCGGGAAGGCAAAGTGTGCGGAGAAATCACTACCCTTTCAGAAATGCTGCATGAATGCACCTCGCTGGAGgCAACCGAATTTGATCAACTACCACAATTTGTTTGCGACAAGTGCGTTTTGTCCTTGAGCAAAGCCTTTATATTTCGCCGTAACTGTCTCAACTCCGATGCTACCCTTCGCGAGCGACTTGAATGCAAAGAAGATGAGGACGAAGCGGTTGATACGCTTTATTTTTATGACGATGAAGAGTCGGATAGCATTGTGGAGGAGTACAATGAACAGATGCAATATGACGAGTACGAAACGATAAATCAAGATCAAATAGCCAGCGAATCGAATTCAGCTGCGGAAGAGCAAGAGGTGACAGAAGAAGTGCACTATGAAAAACTAGATGTCAAAGAAGAAAACACCGAACATGAGGAAGATAGCCAGGATCAAGAAGAAAACTCCAACCACGAGGAAGCAAAAGAGGACAGCAAAGAGTGGGCTCCTCGAAGGCCGAAAAGACGTTCGAAGAGCCTACCTGGACCGCCATTCAAATGCCATGTTTGCGGGAAAACCTTAAGTAATCATAGCTCCTATAAATATCACATGCAGTTGCATTCCGATGTTACACCCTTCCTGTGCAGTGAATGCGGTGAAGGGTTCAAAACACGGAACGCTTACGATGGGCACATGACTACACACGATGAGAATAATCCAAATAAATGTCATATTTGCGGAAAAGTGTACAGGCAAGCGGGTTCTCTACGTTCACATATGCTTACTCACACTGGCGAAAAACCTTTCCAGTGTAATATATGCGGGAAAGGAATGACACAAAAATCAGGATATAAGAAACACATGCTTACGCATACAGGAGAAAAGCCGCATACGTGCGATATATGTGGAGCGACGTTTCGGTTTTCCAGCAATCTAATAACACATCGAAGGAGGCACACCGGCGAAAAACCATATTCCTGCTCGGAATGTGGAAAATCTTTTGTCGGTGGCGAACAATTGAAACGACACCTAACTATCCATAACCCAAAGAAAGAATTCAAATGCGATGTTtgtgacaaaattttcaaccgCAAAAGTGCATTCCTATTGCATTATACTCAACATCACAGTGAAAACAAGTGCACATGTTCAATATGCGGCAAAAGCTACGCTCTAATGAAAGACTTGCTTAACCATATGTTGACGCACACCGATTGCTATACAGAATCAGAGCATAGTTCAAACCAATCACAATATTTTAAATCAGAGAGCACAATTAGTAACTAA
- Protein Sequence
- MAGGQTENICRTCLAETRDLRSLFREGKVCGEITTLSEMLHECTSLEATEFDQLPQFVCDKCVLSLSKAFIFRRNCLNSDATLRERLECKEDEDEAVDTLYFYDDEESDSIVEEYNEQMQYDEYETINQDQIASESNSAAEEQEVTEEVHYEKLDVKEENTEHEEDSQDQEENSNHEEAKEDSKEWAPRRPKRRSKSLPGPPFKCHVCGKTLSNHSSYKYHMQLHSDVTPFLCSECGEGFKTRNAYDGHMTTHDENNPNKCHICGKVYRQAGSLRSHMLTHTGEKPFQCNICGKGMTQKSGYKKHMLTHTGEKPHTCDICGATFRFSSNLITHRRRHTGEKPYSCSECGKSFVGGEQLKRHLTIHNPKKEFKCDVCDKIFNRKSAFLLHYTQHHSENKCTCSICGKSYALMKDLLNHMLTHTDCYTESEHSSNQSQYFKSESTISN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01376096;
- 90% Identity
- iTF_01376096;
- 80% Identity
- iTF_01376096;