Ssin019996.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- prdm10
- Assembly
- GCA_954870665.1
- Location
- OX940879.1:3365452-3368061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.5e-05 0.011 17.3 0.3 2 23 137 158 136 158 0.96 2 11 6.7e-06 0.0011 20.4 1.0 2 23 190 211 189 211 0.96 3 11 0.00014 0.023 16.3 1.7 1 23 230 252 230 252 0.98 4 11 2.1e-05 0.0035 18.9 3.9 1 23 260 282 260 282 0.99 5 11 0.001 0.17 13.6 1.8 1 23 287 309 287 309 0.98 6 11 0.004 0.66 11.7 3.1 1 23 315 338 315 338 0.97 7 11 0.0017 0.29 12.8 4.4 1 20 343 362 343 365 0.94 8 11 2.1e-06 0.00034 22.0 1.5 1 23 371 394 371 394 0.95 9 11 0.0012 0.21 13.3 0.5 1 23 455 478 455 478 0.96 10 11 0.005 0.84 11.4 2.6 1 23 500 523 500 523 0.96 11 11 0.0057 0.95 11.2 1.6 1 23 554 577 554 577 0.98
Sequence Information
- Coding Sequence
- ATGAatataACAGTATACGCTAAACGTGAAATACCTTTGCGTACCAAATTTGGTCCGTTTGAAGGAGATATTAAGTTGTCTAGTGATGTGATATCTGACGTTCTCCTCATACAGGCGACCAACGTTTATCCTTTGCTACTGGTTAATAATGTCCACATTTTAGACGTAACCAATGAGAATTCGTGTAATTGGATGCGATTCGTACGATTGGCGAAAAATTTCACTGAACAAAATCTGTTGCTGATTGAAGAATCGGGCAAATTGTATTTCCGAAGTTGCCAAGTAATTCACTCGAAAGATGAACTGAAAGTAGGCTACAGCGATGCGTACGCCAAGCACTATGACTTAAAAGCCATTAGCCCCACCGATGAAGAGGTTCGAAACATATATAATCGGGAACATCCATGGCCTTGTTATGAATGTGATGAGCGCTTCACATCATCCAAAAAGTTGCAAGATCACTTGAGCGTACATGATATTGATGAAGATTTGATAAGGCCGAAACAATTgcgaaaaaagcgaaaaattcgaAGTAAGCATCTGGTGGATATAAGGAAAAGTTCAATCCGATGTATGTACTGCAATAAAGTTTTCATGACTAATTCAAGTTTGAAAAAGCACGTAAGTGTACACATGGCCCGgcgtaaattttcaaatagtaaGTCAGGAGAGGCGGAAAATAAGTTATTTCGATGCGGAACATGTTATAGAAAGTTCTCAACAGAAGACAAGTTAAAGGTTCATCGACTAATTCATgttcgaaatgaaatgaaaccatTCCAATGTACTTATTGCAACCGTTGTTGCGCAACGCCGACAGCTTTATCAGCACATATGACCACCCATAGCCTGCGATACTTTAGTTGCGTGTTCTGTGCCACGAAATTTACCAATGTATCTGAGTTTAGGAAGCATATAACAACTCATGCTGTAAATGGTTGTTACGTATGTCAATGGTGCAAAAAGAAATACTCAGAATATCATCTAGTCCGCAAACACGTGCGCATATTCCATCAGTCCTTCAAATATTCATGCAACGAGTGCGGACGAAAATTCCCTAATACGACATTTCTAAAGCGGCATAAGCTTTGCCATTCGGAAAAATTTGAGTATCTGTGTTCGCAATGCGGAAAGCAATTTAAACGCAAGGATAAACTTCGTGAACATATTCAGAGAATTCATTCAGAAAAAAGGAAGCAGCGTCCGAATAAGAAAGTTACAGCGCGGCCCTTCTCAGAAATGTCAGTGAAAGACTCCGTTGATGATAATTCGCCGTATCGAGAGTGGGCACCAAAAAGTATTGATGGGCGCGATCATTTACAAGGACGCACAAAGCCGTTAGAAGATTACCGTAATTTCATGTACAAGTGTGACGAATGTATGCTTGGATTCAAACGGCGAGGCATGCTGGTAAATCACATGGTGAAAAGACATCCGGATGTGCCTATTGAATCAGTTCCTGAACTGAATCTTCCAATCTTAAAACCTCAATCGCTCTTCTTTTGTCAATACTGCTCAAAAGTTTACAAGAGTAATGCGAAACGAAAACTTCATATTCTGAAAAATCACCCGGGCTTGGAATTACCTCCACCAGCACGTACTGTTTCCGAACCATCCGAAATTAATGCAAGAACCGTTGGTAATCTACCGACAGAGCCGTATCGATGCAATTGGTGTTACAAACAGTACGCTGCGAGAAGTAGGCTCGTTGCTCATCACCGGAAAGCGCACCCCAATTTGGAACTTATTTCGGAATGTGTTAATCAATGCAGCTATCCTCGTGATAGCGGATATACATTACCTTTAGATGCATATCGTCCTCCATGCTCGccagaaaataaattgttaaaattgtcATCGGCTGCTTTAGAGTTGTCATCGATTGAAGATAGAAAGTTCTTTGATTTTCTCAACGAAAAGTCACAATGTTCTTTACAAGAATCCACTTCATTACCGGCGAATCACCATGACAATTTAAATTTGGACGATAATGGAAATGCGTTTTCCAAAGTCGATGTTAACTTTAAAGTAGTTGATAGTGAATTTGGGGAAAGCTCATCGAATGGTGAATTGAACCGATTACCACAGCTGTTCGAGGAGTCGATTGCTTGTATATAA
- Protein Sequence
- MNITVYAKREIPLRTKFGPFEGDIKLSSDVISDVLLIQATNVYPLLLVNNVHILDVTNENSCNWMRFVRLAKNFTEQNLLLIEESGKLYFRSCQVIHSKDELKVGYSDAYAKHYDLKAISPTDEEVRNIYNREHPWPCYECDERFTSSKKLQDHLSVHDIDEDLIRPKQLRKKRKIRSKHLVDIRKSSIRCMYCNKVFMTNSSLKKHVSVHMARRKFSNSKSGEAENKLFRCGTCYRKFSTEDKLKVHRLIHVRNEMKPFQCTYCNRCCATPTALSAHMTTHSLRYFSCVFCATKFTNVSEFRKHITTHAVNGCYVCQWCKKKYSEYHLVRKHVRIFHQSFKYSCNECGRKFPNTTFLKRHKLCHSEKFEYLCSQCGKQFKRKDKLREHIQRIHSEKRKQRPNKKVTARPFSEMSVKDSVDDNSPYREWAPKSIDGRDHLQGRTKPLEDYRNFMYKCDECMLGFKRRGMLVNHMVKRHPDVPIESVPELNLPILKPQSLFFCQYCSKVYKSNAKRKLHILKNHPGLELPPPARTVSEPSEINARTVGNLPTEPYRCNWCYKQYAARSRLVAHHRKAHPNLELISECVNQCSYPRDSGYTLPLDAYRPPCSPENKLLKLSSAALELSSIEDRKFFDFLNEKSQCSLQESTSLPANHHDNLNLDDNGNAFSKVDVNFKVVDSEFGESSSNGELNRLPQLFEESIACI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01089357;
- 90% Identity
- -
- 80% Identity
- -