Oorn078059.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- prdm10
- Assembly
- GCA_963969285.1
- Location
- OZ017740.1:42897119-42903559[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.3e-05 0.022 18.3 0.1 2 23 162 183 161 183 0.96 2 11 7.6e-06 0.0032 20.9 0.8 2 23 215 236 214 236 0.95 3 11 4.2e-05 0.018 18.6 1.7 1 23 255 277 255 277 0.98 4 11 5.1e-05 0.022 18.3 4.7 1 23 285 307 285 307 0.98 5 11 0.0032 1.3 12.7 1.2 1 23 312 334 312 334 0.98 6 11 0.013 5.6 10.7 3.6 1 23 340 363 340 363 0.97 7 11 2.1e-05 0.0088 19.5 1.6 1 23 368 390 368 390 0.98 8 11 3.5e-06 0.0015 22.0 1.5 1 23 396 419 396 419 0.95 9 11 0.0021 0.9 13.2 0.5 1 23 480 503 480 503 0.96 10 11 0.0086 3.6 11.3 2.6 1 23 525 548 525 548 0.96 11 11 0.067 28 8.5 1.8 1 23 579 602 579 602 0.98
Sequence Information
- Coding Sequence
- ATGTTGATTAGATTTGCAAATATCACAAAAGTACAATCTCTCGTATGGGATGTTGGTACTTTTGGATGGATTGTTCCCGAAATATCTGTCTACGCCAAACGTGAGATTCCATCGCGCACCAAATTCGGTCCATTTGAAGGAGAAATCAAATTGTCAAGTGAAGTCATATCAGACGTTCTGTTGATACAGGCTGCTAACATATATCCTTTACTGCTTGTTAATAACGTCAATATTTTAGACGTTTCTAATGAAAATTCGTGTAATTGGATGCGATTCGTGAGATTGGCGAAAAATTATAGTGAGCAGAATCTTTTGCTAGTTGAAGAATCAGGAAAGTTATATTTTCGTAGTTGCCAGGTGATCGACTCAAAACAGGAGTTGAAAGTTGGTTATAGCGAGGCATATGCTAAGCACTATGATTTGAAAGCAATTAGCCCGACAGAAAAAGAAATTCGTGAAATATACAATCGTGAACATCCATGGCCGTGTTACGAATGTGATGAGCGATTCTCATCTTCAAAAGACTTGCAGGAACATTTGAGCATTCATGATATCGATGAAGATATGACGAAGCCGAAACCATCACGAAGGAAACGAAAATGTCGCGCTAAACATTTGGTGGACATCCGAAAAAATTCAATCAGGTGTCTCTACTGCAATAAAGTCTTTATGACCAATTCAAGCTTGAAAAAACATATTAGTGCGCATTTAGGCAGGCGAAAATGCTTACAAAATAAACAAGGAGAAACAGACAATAAATGTTATCGCTGTGGTGTATGTTATAAAAGATTTACAACGGAAGACAAGTTAAAGACTCATCGGCTAATACACGTTCGTAATGAGATGAAACCTTTCCAATGCACCTATTGTAACCGTTGCTGCTCAACCCCAACGGCATTATCAGCTCATATGACCAGCCATAGCCTTCGGTGTTTCAGCTGTGTGTTTTGTGCTGTGAAGTTCACTAATGTTTCTGAGTTTCGAAAACATATAACTACCCACGCAGTAAATGGGACCTACATGTGTCAGTGGTGTAAGAAGaaaTACTCAGAGTATCATTTAGTGCGCAAACATGTTCGCATATTTCATCAATCGTTCAAATTTCCATGTAACGAATGTGGAAGGAAGTTTCCGAATACAACATTTCTTAAGAGACATAAGCTAACTCACTCCGAAAAATTTGAGTACTTGTGTTCGCAATGTGGAAAGCAATTTAAACGAAAAGACAAGCTTCGTGAACATATTCAGAGAATACACTCTGAAAACCGAAGGCAACGGACAACGAAAAAGGTAACTGTACGACATTTTTCGGAAATGTCTTCCCAAAGTCCAAACAGTGATTGCTCACCATATCGAGAATGGGCGCCAAAAAGCACCGATGATCCTGAGCGCTTATTTAGCCGTCAAGCTCCTTTGGAAGATTATCGTAATTTTATATATAAATGTGACGAATGTATGCTTGGGTTCAAGCGCCGAGGGATGCTAGTGAATCATATGGTAAAAAGGCATCCGGATGTACCAATTGAATCGATTCCTGAACTGAACCTACCAATATTAAAACCTCAATCGCTGTTCTTTTGTCAATACTGCTCTAAAGTTTATAAAAGCAATGCTAAACGTAAGCTACACATTCTAAAAAATCATCCTGGCCAGGAACTACCTCCATCCGCACGTACTGCTACCGAACCATCAGCAATCAATGCAAGAACTGTCGGTAATCTGCCAACGGAACCATTTCGATGCAATTGGTGCTACAAACAATATGCTGCCCGCAATAGACTTGTTGCTCATCATCGGAAAGCTCATCCCAATCTAGAATTGATAACAGATGGAATTAATTATCCAAATCAATCTCGTGATTTTGTGGATAACATGCCAACAACTTTACCTCCTCTTGATGTGTACCGCCCTCCATGTTCACCAGAAAATAAATTGCTAAAGTTATCATCGGCAGCTTTAGAACTATCATCGATTGAAGATAGACAGTTCTTTGATTTTCTCAATGAAAAGTCTCAATGTTCATTGCAAGAACCATCCTCATTGCCAGAAAGTCATCATGATAATTTGAATTTGGATGATAACGGGAATGCCTTTTCGAAAGTGGATGTGAACTTTAAGGTGGTTGATAGTGAGTTTGGTGAAAGTTCTTCGAACGGAGAACTAAATCGATTGCCTCAATTGTTTGAGGAATCCATAGCGTGTATATAA
- Protein Sequence
- MLIRFANITKVQSLVWDVGTFGWIVPEISVYAKREIPSRTKFGPFEGEIKLSSEVISDVLLIQAANIYPLLLVNNVNILDVSNENSCNWMRFVRLAKNYSEQNLLLVEESGKLYFRSCQVIDSKQELKVGYSEAYAKHYDLKAISPTEKEIREIYNREHPWPCYECDERFSSSKDLQEHLSIHDIDEDMTKPKPSRRKRKCRAKHLVDIRKNSIRCLYCNKVFMTNSSLKKHISAHLGRRKCLQNKQGETDNKCYRCGVCYKRFTTEDKLKTHRLIHVRNEMKPFQCTYCNRCCSTPTALSAHMTSHSLRCFSCVFCAVKFTNVSEFRKHITTHAVNGTYMCQWCKKKYSEYHLVRKHVRIFHQSFKFPCNECGRKFPNTTFLKRHKLTHSEKFEYLCSQCGKQFKRKDKLREHIQRIHSENRRQRTTKKVTVRHFSEMSSQSPNSDCSPYREWAPKSTDDPERLFSRQAPLEDYRNFIYKCDECMLGFKRRGMLVNHMVKRHPDVPIESIPELNLPILKPQSLFFCQYCSKVYKSNAKRKLHILKNHPGQELPPSARTATEPSAINARTVGNLPTEPFRCNWCYKQYAARNRLVAHHRKAHPNLELITDGINYPNQSRDFVDNMPTTLPPLDVYRPPCSPENKLLKLSSAALELSSIEDRQFFDFLNEKSQCSLQEPSSLPESHHDNLNLDDNGNAFSKVDVNFKVVDSEFGESSSNGELNRLPQLFEESIACI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01376110;
- 90% Identity
- -
- 80% Identity
- -