Ssin018539.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940878.1:145738875-145748408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00096 0.16 13.6 0.6 2 23 242 264 241 264 0.94 2 13 0.00067 0.11 14.1 2.3 2 21 269 288 268 290 0.89 3 13 1.6e-05 0.0026 19.3 0.6 1 23 295 317 295 317 0.98 4 13 0.26 43 6.0 0.2 2 23 324 346 323 346 0.93 5 13 0.00035 0.059 15.0 0.3 1 23 354 376 354 376 0.98 6 13 0.00086 0.14 13.8 0.2 2 23 604 626 604 626 0.96 7 13 0.00016 0.026 16.1 1.6 1 23 630 652 630 652 0.98 8 13 4.1e-05 0.0068 17.9 0.6 1 23 657 679 657 679 0.97 9 13 0.059 9.7 8.0 0.4 1 20 685 704 685 708 0.90 10 13 0.019 3.1 9.6 0.0 1 23 716 738 716 738 0.97 11 13 7.4e-06 0.0012 20.3 3.1 1 23 745 767 745 767 0.97 12 13 6.7e-06 0.0011 20.4 1.5 1 23 773 795 773 795 0.96 13 13 0.0025 0.42 12.3 1.4 1 23 801 823 801 823 0.97
Sequence Information
- Coding Sequence
- ATGGaattggattttgaaaaaatctgccGAACGTGCTTATCGAGCGAATGTTCGCTGGTTTCAATATTCGAAAACAATATTATTGATGTATCGGGTAGTGAATCGGCGACAACTGTAATTGATTTATTAACCACTTTAACTGATATCAAGATATCCGCCAATGATTGTTTACCAGATCGTATATGTCCTGCGTGTTTGGATGAAATCAAACGGGCGTATTCgtttaaaatcaaatgtgaaAATTCGGACAATGTTCTGAATCGGTATCTACAGGAATATTGCACTAAAATGGTGGAAAATGCAGATAGTAATGGAACTGCTGCTGCAAAGCTCATGCCATACACACGACTATCAAGGAGAAAATTGATGAAGAAGAATGATAAAGTagtagataaaaataaaataacgcctgtaaaaaatgaaatgctaGCAGGAGATAATGATGACGACGTTGTATGCCTAtccgatgaagatgatgaattTGAAGTAAAGGATCAAAGTAAACCAAATTTCACAATGTCTACAGAAAGTACAACCGAACcagaacaaattgaaatatcaGATGATGATGACGAAGATGGTTTCCATGAGTATAACTTTGACAGTGGCTACGCGTTGGACGAAGACTCGTTTCAGGAAAACTCGGAGAATATATCGGACTCCCAATCACCTTTCGCGAATCAAGATTACTTTAGCATACAAGGATTCGACTCGGATTATTTAGTGTGTTCAGTTTGTTCGCAAATGTTTCAATCGACGACTGAATTGAAACGACATATTAAAGATAATCATACTGAAGGATTAACTTGCAATATATGCCAAAGAGatttctccAGTTCCagtaatttatttgaacattgTTCAGTTCACATTCCAATTTGTTATCCCTGTCCAATATGCGGCTACAAACTTAAGCAAgagaaatacttgaaaaaacaTTTGGAACGCCACGCACGTGACAAAGAAGTCAAATGCGATTTGTGTGATCAATTATTTCTCACCAGCTCCGAGATGCGTGTTCATGTTTTACTCAATCACACAGAAGAAATAGACTCCACCTATAAATGCAATACATGTGGCTTGAAATTGCCGAATGCAAGCCTTCTCGAGTCACATAAGGAAAAACACAACAGTGTAGTTCGAAATCACGTTTGTGATATATCAGCCAATGATTGCTTGCcggaaaaaatatgttttgcctGTGTTGAAGAAATAAAACGTGCCTATACCTTTAAGTTACGATGTGAAAACTCCGAATTTATGTTGTATCGCTATTTGAACCAAAACTACACTAAATTgcagaataaaattaatgcGCTTAATTACCATAACAGTGATATACCATACTTACCTCCAGAAATATCAATTACAATAGATACCAATGAAAAAGGCCAAGAGGTAGAATATAAAGTTGATGATAAGCCTTACAACCTGTCGAAAAATgggaaagcaaataaaaatggaCAAATTCAGGAAGATGTTGTGTGCTTATCCGATGATGACGAAGATGTTGAAGATGATATGGATTGTAATGATAGTACAACAAATCAAAGTTCTAATAACCAGCAGAATGCATcttatgaaattgaaatttctgatGATGAAGAAAACAATTTGGTGAGGAAAGGTAAGAGATCACGCGATCATGACGGCCGACACCCAAATGGTATATATCAAGTACTAGATTATGAGAGTATTAAGAAATTCGCCGGTAACATAAGCGAAGCATATCAAGCATTCCTGAATCCAGATAGTAGCAACGACTACAGTTCGCAGTACGATATTTCCGACGCCGAATCAGGACCACGAGAATGTCCCAAGTGTACACAATTGTTTGAATCCGTAGGCGAATTAAAAAGACACATTAGGGAGCAGCATACGAGAGGTTTTGAGTGTAATATTTGTAAAAGAGTCCTTAAATCTCACACCAGTTTATCAGCGCATATCACGACCCATGTGCCACAGTTTTATCCGTGTCCTATCTGTGGCTTCAAAGTAAAACAGCGAAAATACTTAACCAAACATCTTGAACAGCACAACGGTACGAAAACCTACAAATGCGAACTATGTGAAGACAGTTTTTACAATATGACGGAACTTCGAGCTCATAACTTTCTTGCACATGCAGTTGAAAAGGACTCACCCTTCAAGTGTTATGTTTGTGGTATAAAGCTACCAAGTCAAGAGGGTCTCGATGTGCATGTTGCGAAACACAATCAAGTTGTACGCAATCACGTTTGCGATGTATGTCACAAAGCATTCCGTGATAAAACCGGCCTAAACACCCACTATCGAGTGCACACTGGCGAAAAACCGCATACTTGCCCATATTGCCAACGAGGTTTTACTACCCAGTACAGCTTGAAAATGCATGTTGCCATACATACAAATGAAGAATTCCATAAATGTGCTATTTGCCTAATGAAGTTCCGGTATCGAAGTGCGATGGTTAAACATATGGAGGAACATCGTAACAACTCGATCTAG
- Protein Sequence
- MELDFEKICRTCLSSECSLVSIFENNIIDVSGSESATTVIDLLTTLTDIKISANDCLPDRICPACLDEIKRAYSFKIKCENSDNVLNRYLQEYCTKMVENADSNGTAAAKLMPYTRLSRRKLMKKNDKVVDKNKITPVKNEMLAGDNDDDVVCLSDEDDEFEVKDQSKPNFTMSTESTTEPEQIEISDDDDEDGFHEYNFDSGYALDEDSFQENSENISDSQSPFANQDYFSIQGFDSDYLVCSVCSQMFQSTTELKRHIKDNHTEGLTCNICQRDFSSSSNLFEHCSVHIPICYPCPICGYKLKQEKYLKKHLERHARDKEVKCDLCDQLFLTSSEMRVHVLLNHTEEIDSTYKCNTCGLKLPNASLLESHKEKHNSVVRNHVCDISANDCLPEKICFACVEEIKRAYTFKLRCENSEFMLYRYLNQNYTKLQNKINALNYHNSDIPYLPPEISITIDTNEKGQEVEYKVDDKPYNLSKNGKANKNGQIQEDVVCLSDDDEDVEDDMDCNDSTTNQSSNNQQNASYEIEISDDEENNLVRKGKRSRDHDGRHPNGIYQVLDYESIKKFAGNISEAYQAFLNPDSSNDYSSQYDISDAESGPRECPKCTQLFESVGELKRHIREQHTRGFECNICKRVLKSHTSLSAHITTHVPQFYPCPICGFKVKQRKYLTKHLEQHNGTKTYKCELCEDSFYNMTELRAHNFLAHAVEKDSPFKCYVCGIKLPSQEGLDVHVAKHNQVVRNHVCDVCHKAFRDKTGLNTHYRVHTGEKPHTCPYCQRGFTTQYSLKMHVAIHTNEEFHKCAICLMKFRYRSAMVKHMEEHRNNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01089322;
- 90% Identity
- -
- 80% Identity
- -