Oorn012728.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017738.1:159505241-159530469[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00083 0.35 14.5 0.2 2 23 261 283 260 283 0.94 2 14 0.0017 0.71 13.5 2.3 2 21 288 307 287 309 0.89 3 14 2.7e-05 0.011 19.2 0.6 1 23 314 336 314 336 0.98 4 14 0.45 1.9e+02 5.9 0.2 2 23 343 365 342 365 0.93 5 14 0.00083 0.35 14.5 0.3 1 23 373 395 373 395 0.98 6 14 4.6e-05 0.019 18.5 3.1 1 23 402 424 402 424 0.97 7 14 0.016 7 10.4 0.2 2 23 650 672 650 672 0.95 8 14 0.00017 0.071 16.7 0.9 1 23 676 698 676 698 0.98 9 14 7.2e-05 0.03 17.9 0.6 1 23 703 725 703 725 0.97 10 14 0.1 43 7.9 0.4 1 20 731 750 731 754 0.90 11 14 0.0037 1.5 12.5 0.1 1 23 762 784 762 784 0.98 12 14 1.3e-05 0.0054 20.2 3.1 1 23 791 813 791 813 0.97 13 14 1.2e-05 0.0049 20.3 1.5 1 23 819 841 819 841 0.96 14 14 0.0044 1.9 12.2 1.4 1 23 847 869 847 869 0.97
Sequence Information
- Coding Sequence
- ATGCAGCGGACCTTTCGTTTACCACATCCCAAAACATTGGTCGATGTATTGACTGCTGCTCTCAAATACGAAGCAGCTACGAAGGCTTCAGGAAACAACAAAGTCAGGACCATTCAAAAAGAAGGCGGGGAAGGCAACAAAAAAAGGCATCAAAAGCGTCAAAGAAGATCAATGCTGGAATTATGGCGAGCTAGGGAATGGACGCAGATATCAGCCAATGACTGTTTACCAGATCGTATATGTCCTGCGTGTTTGGAAGAGATCAAACGAGCATACTCGTTTAAAGTCAAGTGTGAAAACTCGGACAATGTGCTGAATCGTTACCTTCAGGAGTATTGCACTAAAATGGTGGCAAAGGCAGATAGTAGTGGGACCGTTGCAGCGAAACTCATGCCATACACAAGACTATCAAAAAGGAAAGCTTCCGCCAAAAGTGacaaaatagaagaaaaaaacaaattaactGCTGCAATAAAGGATGAAGTGGCAACGGAAAGTAATGATGACGATGTAGTTTGCCTGTCGGATGAAGACGATAATTATGCCGGAAACGACCAAAGTAAACCTAGTTTCGTTAAGTCAACCGAAAGTACAACAGAACCAGAACAAATTGAAATATCAGATGATGAAGAGGATGGGTTCCTTGAGTATAATTTTGACAGTGGCTATGCGTTAGACGAGGATTCGTTCCAGGAGAACTCTGAAAACATATCTGACTCGCAATCACCGTTTGCTAATCAAGATTTCTACAGCATACAAGGCTTTGATTCGGATTATTTATCGTGTTCAATCTGTTCGCAAATGTTTCCAACTGCTGTTGAAATGAAGCGCCACATTAAAGATATGCATACTGAAGGATTGACTTGTTCTATATGCCAAAGAGACTTCTCCAGTTCCAGTAACTTATTCGAACATTGTTCGGTTCACATTCCAATTTGTTATCCTTGTCCAATATGCGGCTATAAACTTaaacaagaaaaatatttaaagaaacatttGGAGCGTCACGCACGTGACAAAGAAGTCAAATGTGATTTATGTGATCAATTATTTTTAACCAGTTCCGAAATGCGTGTTCATGTTTTACTAAATCACACAGAAGAAATCGATTCGACTTATAAATGCAATACGTGCGGCTTGAAATTGCCAAGTGCTAGCCTCCTCGAGTCGCATAAAGAGAAACACAATAGTGTAATACGAAATCACGTTTGTAGTATATGTTCGAAGGCTTTTAGAAGTAAAACCAAACTAACAGAACATTATCGTTTGCATACAGGGGAAAAACCGTATataTCAGCAAACGATTGCTTGCCTGAAAAGATATGTTATGCCTGTGTTGAAGAAATTAAACGTGCCTACAGCTTTAAGTTAAGATGTGAAAATTCCGAATTTATGTTGTACCGATATTTGAACCAAAACTTTACTAAactacaaaataaaattaatgctCTCAATTACCATAACAGTGATATACCATACTTACCTCCAGAAATCTCAATTACAATAGATACCAATGAAAAAGGCCAAGAGGTTGAATATCAAGTAGAGGATAAACCTTATAATTTGTCGAAAAACGCGAAAACTAACAACAAAAATTCTCAAGTAGCAGAAGATGTTGTTTGCTTGTCCGATGATGACGGCGATGTTGAAGATGATGATATGGACTATAATGACAGTGGAACTAATCATAGTTCCTCTACTCAACAGAATGGTTcttatgaaattgaaatttcggatgaTGAAGACAGTAATGCTACGAAAAAAGGAAAACGATCAAGGGATCATGATGTTCGACATTCAGATGGTGGATATGAAGTATTAGATTATGAAAGTATTAAGAAATTCGCTGGTAATATCAGTGATGCTTATCAAGCGTTTTTGAATCCAGACAGCAGTAATGATTACAGTTCTCAGTACGATATATCCGATGCAGAATCAGGGCCACGCGAATGTCCAAAATGCATAAAATTGTTTGAATCGGTTGGCGAATTGAAAAGACATATACGAGAACAACATACAAGAGGTTTTGAATGTAATATATGTAAACGAGtccTTAAATCGCATGCAAGTCTATCAGCTCATATCACAACTCATGTGCCACAATTTTACCCGTGTCCCATATGCGGCTTTAAAGTGAAACAACGAAAATACTTAACTAAACACCTTGAACAACATAACGGAACCAAAACTTACAAGTGTGAACTTTGTGAAGATAGTTTCTACAATATGACCGAATTACGAGCCCACAACTTTCTTGCACATGCTGTTGAAAAGGATTCTCCCTACAAGTGCCATGTATGTGGTATCAAGCTGCCAAGTCAAGAAGGTTTGGATGTGCATGTTGCTAAACACAAACAAGTAGTTCGTAACCATGTTTGTGATGTATGTCACAAAGCGTTTCGTGACAAAACTGGCCTTAATACACACTATCGAGTACATACTGGTGAAAAACCACATACTTGCCCGTATTGCCAACGAGGCTTTACGACGCAGTACAGCTTGAAAATGCACGTTGCCATACATACAAACGAAGAATTCCATAAATGTGCTATTTGTTTGATGAAGTTCCGTTATCGTAGTGCGATGGTCAAACATATGGAAGAGCATCGCACCAATTCGGTTTAA
- Protein Sequence
- MQRTFRLPHPKTLVDVLTAALKYEAATKASGNNKVRTIQKEGGEGNKKRHQKRQRRSMLELWRAREWTQISANDCLPDRICPACLEEIKRAYSFKVKCENSDNVLNRYLQEYCTKMVAKADSSGTVAAKLMPYTRLSKRKASAKSDKIEEKNKLTAAIKDEVATESNDDDVVCLSDEDDNYAGNDQSKPSFVKSTESTTEPEQIEISDDEEDGFLEYNFDSGYALDEDSFQENSENISDSQSPFANQDFYSIQGFDSDYLSCSICSQMFPTAVEMKRHIKDMHTEGLTCSICQRDFSSSSNLFEHCSVHIPICYPCPICGYKLKQEKYLKKHLERHARDKEVKCDLCDQLFLTSSEMRVHVLLNHTEEIDSTYKCNTCGLKLPSASLLESHKEKHNSVIRNHVCSICSKAFRSKTKLTEHYRLHTGEKPYISANDCLPEKICYACVEEIKRAYSFKLRCENSEFMLYRYLNQNFTKLQNKINALNYHNSDIPYLPPEISITIDTNEKGQEVEYQVEDKPYNLSKNAKTNNKNSQVAEDVVCLSDDDGDVEDDDMDYNDSGTNHSSSTQQNGSYEIEISDDEDSNATKKGKRSRDHDVRHSDGGYEVLDYESIKKFAGNISDAYQAFLNPDSSNDYSSQYDISDAESGPRECPKCIKLFESVGELKRHIREQHTRGFECNICKRVLKSHASLSAHITTHVPQFYPCPICGFKVKQRKYLTKHLEQHNGTKTYKCELCEDSFYNMTELRAHNFLAHAVEKDSPYKCHVCGIKLPSQEGLDVHVAKHKQVVRNHVCDVCHKAFRDKTGLNTHYRVHTGEKPHTCPYCQRGFTTQYSLKMHVAIHTNEEFHKCAICLMKFRYRSAMVKHMEEHRTNSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01376087;
- 90% Identity
- -
- 80% Identity
- -