Basic Information

Insect: Stratiomys singularior
Gene Symbol: -
Assembly: GCA_954870665.1
Location: OX940880.1:95548141-95554046[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.4e-06 0.0004 21.8 1.4 1 23 311 333 311 333 0.98

2 9 2.1e-07 3.5e-05 25.1 1.7 3 23 341 361 339 361 0.97

3 9 3.3e-05 0.0055 18.2 0.4 1 23 367 389 367 389 0.98

4 9 3.8e-06 0.00063 21.2 0.9 1 23 395 417 395 417 0.98

5 9 2.1e-05 0.0035 18.9 1.7 2 23 539 560 538 560 0.96

6 9 2.7e-09 4.4e-07 31.1 1.6 1 23 566 588 566 588 0.98

7 9 0.0014 0.24 13.1 0.6 3 23 596 616 594 616 0.97

8 9 0.00013 0.022 16.3 0.8 1 23 622 644 622 644 0.99

9 9 0.018 3 9.6 0.8 1 23 650 674 650 674 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.4e-06	0.0004	21.8	1.4	1	23	311	333	311	333	0.98
2	9	2.1e-07	3.5e-05	25.1	1.7	3	23	341	361	339	361	0.97
3	9	3.3e-05	0.0055	18.2	0.4	1	23	367	389	367	389	0.98
4	9	3.8e-06	0.00063	21.2	0.9	1	23	395	417	395	417	0.98
5	9	2.1e-05	0.0035	18.9	1.7	2	23	539	560	538	560	0.96
6	9	2.7e-09	4.4e-07	31.1	1.6	1	23	566	588	566	588	0.98
7	9	0.0014	0.24	13.1	0.6	3	23	596	616	594	616	0.97
8	9	0.00013	0.022	16.3	0.8	1	23	622	644	622	644	0.99
9	9	0.018	3	9.6	0.8	1	23	650	674	650	674	0.95

Sequence Information

Coding Sequence: atggcaATCAACTTCTCAGCCTCATTTGCGGCTTGTTTGGCCGCCGGACTGAAAGTGCCACGTCAAATTATGTATTGTATATCGCAGGACACTGGTGCCCCGTATGTTTTGTACAAAGATTCACAAGAAGCAGCTGAACGAAGTGCAGCATTGGGTGGTGCTGGAGCGCAATGGGGTACTGACGTGTATCCTGCAGCAATGCAACAATCACATTTAGCAGCCCAAAACGCTCAAAATGCTGCTCCACAAATCGCTGCTGTTGCGGCTGTAGCAGCGGCAgctcaacaacaacagcaacaacaaccgCACAGCCCCAACGGCGATGGTGATCAAAATCGTGATGGTGGAGGAGGCGGTGGTGGACCTCATCAAACAGTTTTACCGTCACCTTCCACTAGTCCATATCCACAACGAACGAACGGGCAAGACGATGATGTGGCAATGAATCAGGTAGCGAgcttacaacaacaacaagggGTGCAATCTGGTCAGCAACCATCAAATCAAAACGCTCAACAACAAAGTCAAAATCCAAACCAAAGTTCTAATGATCAACAACAAAGCATTGAGAATATGTCAGTGGGTGATCCCCAATCAGCTGCAtcgcaacaacaacaaaatcaacaaaacggTGGAAATCCCAATCAAGCTGGTGGGCAATGTTTTGACCCACCACAGACTGAATTAAGTGGGTACTATGCACCCCGGCATCCTGGCCCACAAGGTACCATGTTAGCTACAACAGCGGGATTTCCACCTCTACACTATCTAAACAAGCCCGTACTTCCTGGAATGGGTGGAAATCTAGATCAGAATGGTGGGCTCGAATATGCCATGCCTGACCTATTGCCTGGCCACGGGATGCATCAGACAACAGCTACACCATCGCCCAGCTCGCATAAAACAAAGCCACAAAATGATTTACGCCTGTTTAAATGTGTCACTTGTGGAAaggattttaaacaaaagagCACTCTTTTACAACACGAACGTATCCATACGGATTCGCGGCCGTACGGCTGTGCGGAGTGTGGCAAACGATTTCGTCAGCAATCACATTTAACGCAGCATTTACGTATCCACGCAAATGAGAAACCATTCTCGTGTGCCTATTGTCCACGCAGCTTCCGACAGCGGGCCATATTGAATCAACACATACGCATCCATTCGGGTGAGAAGCCCTACGCATGCCCCGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAACATGTGCGCACCCACCAAGATGTATCCCCACatcttatatttaaaaatggacCACATCCGACATTGTGGCCACAAGATGTACCATATCCAGGCGATGAGACTGAaaccaaaaatgaaattgttggcGGGTATCCGGATGATGCATCACAAGGTACGCCTGATTCTCGTGCATGTTTTTCACCTGATGGATCTGGTCTTTTACATTATCCCGATCACTTTAAAGATGCCAAAGGTCTTAATCACTCAGTGTTTGGTGGGAATCTCGGATCATTACAATATATAAAGCAAGCAGGCAGTGGTACGGGACCCAATGGCCAAAAGAGTATGCTCCCAGATGTTATTCAACATGGTCGATCGGCTGGCATGCCATTATATGTACGATGTCCTATTTGCCAAAAGgagttcaaacaaaaaagtaCCCTGCTGCAACATGGCTGTATCCATATAGAATCACGTCCATATCCATGTCCGGAATGTGGAAAGAGATTCCGTCAGCAATCGCATTTAACGCAACATTTAAGGATACATACGAACGAAAAGCCGTACGGATGTTTGTACTGTCCGCGATTCTTCAGACAAAGGACGATTTTGAATCAACATATTCGGATTCATACGGGTGAAAAACCATATAAATGTGCACAGTGTGGGAAAGACTTCAGGCAAAAAGCTATTTTGGACCAACATACAAGAACGCACCAGGGAGATCGACCATTCTGCTGTCCTATGCCAAATTGTCGACGACGGTTCGCCACCGAACCGGAAGTGAAAAAGCATATAGACAACCATATGAATCCGCATTCATCAAAATCTCGTCGACACCTCAATCATATGACGAATGAAGCGAAAAATGCAGCGGCTGCAGCGCAATTTTTAAATTCGATCGATAATAAAGCGAACGTAATACCACGAATGGGACCAGTTGTTAAGCATGAATTATACTTTCCACAGTGCTATGGTCCACCGTTGCCGTTCAATCAGGCATTTGGTGGAGcgcagcaacaacagcagcagcagcaacaacagcaacaacaacaacagcagcaaccaCAAGCGGCCCATGGTGGTACAAGCAATGTGACACCTAGTGGTGGTGTATCCGTAACTGGCGCTCCTGCAGGTGGTGCAGGCGGTACGGTGGTGACAGTTGCAAGTAGTGGTGCCGGTACACAACCAAATGCAACAACAGCTGTTGCACAGTGA
Protein Sequence: MAINFSASFAACLAAGLKVPRQIMYCISQDTGAPYVLYKDSQEAAERSAALGGAGAQWGTDVYPAAMQQSHLAAQNAQNAAPQIAAVAAVAAAAQQQQQQQPHSPNGDGDQNRDGGGGGGGPHQTVLPSPSTSPYPQRTNGQDDDVAMNQVASLQQQQGVQSGQQPSNQNAQQQSQNPNQSSNDQQQSIENMSVGDPQSAASQQQQNQQNGGNPNQAGGQCFDPPQTELSGYYAPRHPGPQGTMLATTAGFPPLHYLNKPVLPGMGGNLDQNGGLEYAMPDLLPGHGMHQTTATPSPSSHKTKPQNDLRLFKCVTCGKDFKQKSTLLQHERIHTDSRPYGCAECGKRFRQQSHLTQHLRIHANEKPFSCAYCPRSFRQRAILNQHIRIHSGEKPYACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPQDVPYPGDETETKNEIVGGYPDDASQGTPDSRACFSPDGSGLLHYPDHFKDAKGLNHSVFGGNLGSLQYIKQAGSGTGPNGQKSMLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCLYCPRFFRQRTILNQHIRIHTGEKPYKCAQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHSSKSRRHLNHMTNEAKNAAAAAQFLNSIDNKANVIPRMGPVVKHELYFPQCYGPPLPFNQAFGGAQQQQQQQQQQQQQQQQQPQAAHGGTSNVTPSGGVSVTGAPAGGAGGTVVTVASSGAGTQPNATTAVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00628576;
90% Identity: iTF_00793724;
80% Identity: -