Ssin008683.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- hang
- Assembly
- GCA_954870665.1
- Location
- OX940877.1:154951146-154959859[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.022 3.6 9.4 2.4 2 23 238 260 237 260 0.95 2 21 0.059 9.8 8.0 1.7 2 22 347 367 346 367 0.93 3 21 0.6 99 4.9 0.8 3 21 377 395 376 396 0.95 4 21 0.006 1 11.1 1.3 1 23 436 459 436 459 0.91 5 21 0.042 6.9 8.5 1.0 2 22 498 518 497 520 0.89 6 21 0.0002 0.034 15.8 1.5 1 23 560 583 560 583 0.93 7 21 0.00059 0.098 14.3 0.1 1 23 591 614 591 614 0.94 8 21 0.36 60 5.5 5.0 1 23 652 674 652 674 0.99 9 21 7.6e-06 0.0013 20.3 0.6 1 23 723 745 723 745 0.98 10 21 0.00021 0.035 15.7 4.9 2 23 783 805 782 805 0.95 11 21 0.0026 0.42 12.3 1.5 2 23 814 836 813 836 0.96 12 21 0.00066 0.11 14.1 0.2 1 23 848 871 848 871 0.94 13 21 0.001 0.16 13.6 1.5 1 23 895 917 895 917 0.98 14 21 0.0032 0.53 12.0 0.9 1 23 925 948 925 948 0.96 15 21 0.13 22 6.9 7.9 2 23 956 978 955 978 0.96 16 21 0.00031 0.051 15.2 0.8 3 23 1038 1058 1036 1058 0.96 17 21 0.00011 0.019 16.6 0.1 1 23 1093 1115 1093 1115 0.98 18 21 1.1e-05 0.0019 19.7 0.2 2 23 1141 1163 1141 1163 0.93 19 21 0.62 1e+02 4.8 0.1 2 23 1183 1204 1182 1204 0.93 20 21 0.00023 0.039 15.6 0.2 3 23 1217 1237 1217 1237 0.99 21 21 0.00082 0.14 13.9 1.3 1 23 1396 1418 1396 1418 0.97
Sequence Information
- Coding Sequence
- ATGACAGACGATATATTTTTCCGGGCTCGGCAGAATTGTTGTCGCCTGTGCTTGGCCCCGGATAGTGAATGCGTTCCAATTTTGACGAGTTTGGCTGCTGATAAGGAGCCTCTTTCGTGGAAAATTCAAGCGTGCGTCAACGTAAAGGTTAACCAATCGGATCGTTTGTCGTTACGAGTATGTCACTCGTGTATCAGCTTTATGAATTCATGGCAAAGCTTCAAAAATCGGTGCTTGGCGGCTCAAATGAAGCAAATGAATTGGTTGGAAATGGCTAAAAATTCAATGCGCAGGCAAGCTGTCCCAGTGCAGCAGCGCCAGAAACAATCTGAAAATTCAACTGCGAACACTGCCGTGGAGGACAAACCGATTCAAAATCGTCAGCAAAATAAACCAGCAGCTGGACGGCCTATGCCTATGCCAATTATAATCAAGCAAGAGCCGATTGATGAAGAAGCAGATGCCCAAGAGGAAGCTGCAATGAGAATGAACTTGGATCCAACGGAATTCTTAGATGAAAACATTATTCCTAAACAGGAAATCGAGGATAGAGAAGAAGATTCATTACTAGAACCAAGCAAATTTATGAATGAAGACCCCCAAATTTTGACATCTTTGGGATTGACacaaatcagaaaaataaatccGTACAGTCAGaatattAATACTGACAAGAAACGCCCACGTGAAAATGAAGAGTTGCCAGCAACACAATGCCGATTCTgccatattaatttttcatcggCAACAAATGCTCGCCGTCACGAGCGTAACATACATCGTGCGTCTGAGATGAATGTGGTCGACACACCAAAGTTTTGTATAAAGCCAACAGCACCTCGTTCCTTGCTAAAACCACTTCATTCGTTGCGATCTAATATAAAGCCCTCATTGAAAGTTGCACCACCACCAGTGACACCTGAAATGATGGGTGTCTTTGAGTATGACAAACCAGAAAAATATCGACATCTCTTGACTGACTCGAAActaatattcattcgcaaacatGAAGATTTCCTGAAACAATACCAAACATTAACGTGTACGTGTTGTCCTCAAACTTTTCCCACCTATAAGACATTTATGGCACACATGCGACGAAGGTTTCCGAACTTAGCgagaaatttatgttttaaatgtttgaagCAATTCCAATCGAAGGCAACTTTTGTTGCGCATCTGAAGAAAAGGAACTGTATAAATTTATATCAGCTTTACAAATCGGATGACGCAATTCCTAAAACAGGGTTGCTAGGAATTACGACAGAGAAAGTTGCAACGAAGGAACTTCTTAGTAATAAGGTGTACGAATGCAAATTATGCTCTAAAACATTCCGATTAAAATTAGACTTCCGCAGTCATGTATATGAAGCGCATGGGGAAAGTATAAGAAACGTATCACCGGGGCGTTGTGCTTTTTGCAGTGCACAACTAGACGATCCCATGGTGAAACGACGCCATTACAACAATATGGAGTGCGTTGTGCTAATACGATGCAGTATTTGTCATGAAAAGTTCGAATTTCAACAACAGTTCATTGACCACGTCTACGATATGCATTTAGCGACAGCTGGCAACAACAATGACGTATCGGGAGAGGTTTCCGATGCCACTCAAACGGATGTACCATCGAGCGCGAATGTTTCAATGGGCGATTCGATTAATTCGAGGCTTCCCCATAGTTGTAATATTTGTGGGCAAACTTACAACAATTACTACAACGTTCTTCGTCATATGGAGGGTAAACATCCGGACCAAGTGCCTAAACGATATACGTGCGACAAATGCGATGCAGGTTTTCCGCGCCAGGGACCTTTGCGTGAACATATGTACGAAGTACATGGGACAACACTACCTCGCGCCCGCAGGGAACTACTCTCATGTCGAATGTGCAGCGAACAAATTGATACCCGCGAAAAGTGGCTGGCGCATCAGGGCGAAAAGCATTCACGCTACACTTGCTGCTACTGTACCTTTCAAAGTAAAAGCTTAGATAAGTTTAAGGATCATATCGAAACACATCCGCAGTTAGCTGTGCGAAATGTCCCAATACCTGTTGTGACGAGTTCTAACGTTATGTCCGTGACGAATGGAGGAAATGAAGGTGATGATGAAGACGATGAAGACGTTCAACCtgctaaaaaaatcaaactagaTACGTCAATTCACACATGCCCAATGTGCAACGCTTCATTCAGTGGTAATGTGGCTCTGTCGAATCACATGCGAACGCACTATACTGCAGATGGGGCAGGGGGAAATGAAACCAAAGTAAATGTAACTGGGGTGGCTTCTGATAACACATCAACTCCGAATCTTGCTGCATCGGAGTCAATTCGACGAATTCGCTGCCATTTGTGTTCAAAGCGTTTCACGTCAAAGAAAACGTATCGAAAACATATGCTGAATGAACATCAAGTGCGCAATGTGAGCTTCATTAAGTGCAGCGTTTGCAAGGCGGAATTCACTCACGAAAGAGGGCTTAAAGTTCACATGTACAAGACGCACGGGACGATAATGAATGAAAGTGTCAATGCGATTTATGAGTGTGAGATCTGTGATTCAGAATTCAAGAGTGAAAAGTCACTGAATCAACATCGGGGAATGGTGCATAAGAACCGAGAGAAGGATCAATTGACAGAGGCGATTCCTCAAGTTTCACAGAGTGGTCCAACTTACTGGCATCAGTGCAGTTACTGCGCTCTTAGTTTTGATTCGAATAAAAAGCTTGCGGTGCATTTGAACAGTCATGAGGAGTTTGATGCGAATGATTATTCTTGTAAAGACTGCGGAAATGTTTACAATGGAAGGAAAAGCCTTTGGGTGCATCGATACAAGAAACACAGAGAAATTCCAAATCCGTCAAAGTGTCATCTTTGCAACAAGCTCTTCCATacaactaaaaaattaaaattgcataTGAAAAATCGACACGACAAGGAAGAGGATGACGCCGAAAATGAGGAACCAATGCAATGTGATGATGATACTAAACAGGGCTTGGATCTAGAGCATGATAGCGACGATGAGCAGGAGCAAGATGATGAAAGTCATATGGAGCAAGATCATGATGTATCAGGTGGATTAGATCTGTTGGCAGGGAAAGTACATTGTTCCGTTTGCAATGAAGAATTCACTGATCAAGATCTGTTTGACAAACATATGGAGATGCATCAAATTGATTTGTATAGTGACAATCCCCTTGCGGCGATGTTCGACACTGGGCCGGATGATCCGAATGAATATTTCATGAATCGAATGAGTGAGAATGGCGCCTATACTTGTGACATTTGTCCGAAAAGTTTTCCAGCGCTGACGGCGTTAAAAGTGCACCGTAATTGGCATTTCCGGCAAGATGGGAAACTGgtTCCCGCTGACTCCAATATGCGGTCTCTGGTACAGAAAAAGAAAGCAGGGAATGTGTGTGAATTTTGCGATACAGGTTTCTCTAGTTCGAGTAATCTTCGTCGACATATTATTGAGGTACATAATCGTGAAAATATGAACAACCCAGATCGCGCACGTAAGTTCATGGACAAGTACTTGGAGTGTACCAAGTGTGCAATGAAATTCGACGAGAAGGCGGAATGGGTTAAACATAAAATCGGTCATGCAAATGAGAGCTTTATATCGGCATTTGAATGGGGATGCGAAATATGTGGTAAAATAGTGTCGAGGAAAGAACGACTTGTTCAGCACATGAATAGTCACTTGAAGAAGAGAGATCAAGAAGATGGAAACGCCAGTGTGATGAGTGAAGATCAAAGTAATTCACAGGACACAGTGCTGTCGAGTAATCAAAGTCGTCGTAGTGCGATGGGTAAACCAAGGACAGGTGAAGATGAAGATGGGGATGGGGAGCACGATGGCGATGCAGATGAGATGGAGCAAACTGGCGAAAATGACGCGTTTGAACGCAAATCGGGAAATATTGAAGAGCCGGAAGAAAGCATAAATGATGTTCACGATGAACAAGAGTCCGACGACGATGACGACAATTGTGATGACGAAGTCGAAGATAAAATGGAGGATGAACAGGATACGGAAAACAATCATTTACATTATGATGACGATTCCAGTCAGCAATACCAAGAAGTGGATCCAGATCAAGACGATATCCAAGACGAAGACGATGAAGATGaagaggaggaagaagaagaggatgatCAGGATAATATTGGCGCATATTCATGCGATCTATGTCAAGTGTACTTTGAAACATCAAAACAATTGCGTCGGCATGTAACTAGCCACTTCCTGAATGGTCCTGGTTCAGTAACATTAACACAGATACCCAAAGAAAAGTCGTCGTATGTTTCCAAAACAgacgcaggagaagagacaacAACGTTAACATCGGCGTAA
- Protein Sequence
- MTDDIFFRARQNCCRLCLAPDSECVPILTSLAADKEPLSWKIQACVNVKVNQSDRLSLRVCHSCISFMNSWQSFKNRCLAAQMKQMNWLEMAKNSMRRQAVPVQQRQKQSENSTANTAVEDKPIQNRQQNKPAAGRPMPMPIIIKQEPIDEEADAQEEAAMRMNLDPTEFLDENIIPKQEIEDREEDSLLEPSKFMNEDPQILTSLGLTQIRKINPYSQNINTDKKRPRENEELPATQCRFCHINFSSATNARRHERNIHRASEMNVVDTPKFCIKPTAPRSLLKPLHSLRSNIKPSLKVAPPPVTPEMMGVFEYDKPEKYRHLLTDSKLIFIRKHEDFLKQYQTLTCTCCPQTFPTYKTFMAHMRRRFPNLARNLCFKCLKQFQSKATFVAHLKKRNCINLYQLYKSDDAIPKTGLLGITTEKVATKELLSNKVYECKLCSKTFRLKLDFRSHVYEAHGESIRNVSPGRCAFCSAQLDDPMVKRRHYNNMECVVLIRCSICHEKFEFQQQFIDHVYDMHLATAGNNNDVSGEVSDATQTDVPSSANVSMGDSINSRLPHSCNICGQTYNNYYNVLRHMEGKHPDQVPKRYTCDKCDAGFPRQGPLREHMYEVHGTTLPRARRELLSCRMCSEQIDTREKWLAHQGEKHSRYTCCYCTFQSKSLDKFKDHIETHPQLAVRNVPIPVVTSSNVMSVTNGGNEGDDEDDEDVQPAKKIKLDTSIHTCPMCNASFSGNVALSNHMRTHYTADGAGGNETKVNVTGVASDNTSTPNLAASESIRRIRCHLCSKRFTSKKTYRKHMLNEHQVRNVSFIKCSVCKAEFTHERGLKVHMYKTHGTIMNESVNAIYECEICDSEFKSEKSLNQHRGMVHKNREKDQLTEAIPQVSQSGPTYWHQCSYCALSFDSNKKLAVHLNSHEEFDANDYSCKDCGNVYNGRKSLWVHRYKKHREIPNPSKCHLCNKLFHTTKKLKLHMKNRHDKEEDDAENEEPMQCDDDTKQGLDLEHDSDDEQEQDDESHMEQDHDVSGGLDLLAGKVHCSVCNEEFTDQDLFDKHMEMHQIDLYSDNPLAAMFDTGPDDPNEYFMNRMSENGAYTCDICPKSFPALTALKVHRNWHFRQDGKLVPADSNMRSLVQKKKAGNVCEFCDTGFSSSSNLRRHIIEVHNRENMNNPDRARKFMDKYLECTKCAMKFDEKAEWVKHKIGHANESFISAFEWGCEICGKIVSRKERLVQHMNSHLKKRDQEDGNASVMSEDQSNSQDTVLSSNQSRRSAMGKPRTGEDEDGDGEHDGDADEMEQTGENDAFERKSGNIEEPEESINDVHDEQESDDDDDNCDDEVEDKMEDEQDTENNHLHYDDDSSQQYQEVDPDQDDIQDEDDEDEEEEEEEDDQDNIGAYSCDLCQVYFETSKQLRRHVTSHFLNGPGSVTLTQIPKEKSSYVSKTDAGEETTTLTSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01089308;
- 90% Identity
- -
- 80% Identity
- -