Ssin009360.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- lrrfip2
- Assembly
- GCA_954870665.1
- Location
- OX940877.1:166968478-166982992[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.2 8.4e+03 -3.1 3.4 46 83 71 108 37 151 0.53 2 3 8.4e-113 3.5e-108 362.6 34.5 1 299 198 482 198 483 0.94 3 3 0.098 4e+03 -2.0 4.1 220 244 511 535 487 556 0.46
Sequence Information
- Coding Sequence
- atggaaaatatcCAAGCGATGGAGTTGAGTGACATTGAAAGTGAAGTGAGGTCTGCCAAGAAAACGTCGAAACCAGAGCGAAATAATAATGTGTTGATAGATTCGAAAAATCCAGCAAGTCGAAATATCAGTCAGGAAGAATTAGAAATTAATGATAACGACGAGGAGTTTGATTTCAGTGATGGCGATTTCAATTCGGGGAGTGAAGATGATGGTGATAATGAAACAATTCACGGTTGCTCTGACAGTGAAATGAATGGTGATCAAATGGATACCAAAAGAAGTTCTAACAATCAAGCCAACAGTGTTGTGAATGAAGCCGAAAATTTAGTCCTTTTGGAAAAGCAAAACGCAAACCAAAATGAAGAGAAAAGAGATGGAGAAGAAACAAAAGGCTCATTTGAACGAAACCGTTCAGAATGCGATGTTGAAAGTGCCGAAGAAAGATTTCACAGGATCGACAGCACTGCAACAGATGCCAAAACTGAAGAATGCCATGTTAGCGTATCGGAAGAGGAAGACAATGTCTTTTGCAGCGGCGACGAAGAGTCCGATTTACTAGTGACATTCCTGGACAAGGCTAATGAAATTGCCGAAGCAAGATTAGCAGCGCGTCGTCAAGCGCGTGCAGAAGCACGTGAAATTCGAATGCGAGAGCTGGAGCGGCAACAGAAAGAACAGGAACAAAATGCCGATCGGGTGTTTGATATGCAAACAGCAGCAGGGATTGATCCTTTGTCCCGATCTCGACACACTTTGTCGGCAGGATCGGCGCGAGGAAGCTCCTCATTGTCATCACGACGTAGTAGTGAGGATTCGTTGGAGGAGGAAGGTCGAAGCCTACGAGATATTCGACATGAACTTAAGGAAGTCGAGGAACGATTTCGAAAGGCAATGATTGCCAATGCTCAGCTAGATAATGAACGAGCCTCGCAATCATATCAAATACAGCTACTAAAAGATAAACTCGAAGAAATGGAAGAGAATTTTGCACAATTACAACGTGAATACAAGGAGAAATGTCGCGATCATAATGCTTTAAAACGAAATTTAGATAAGGTCGAGGAAGAATTGAAGTTAGTGCGGGGGCAACTAGAAGAACGAGATACTCTTATAGCCGAGCAAGGTTTAGTGATAGTCATGATAGAAAATGAAGATGGCTCAGATGCCAAGCGCGCTCTAGTCACTGTAGATAACGCACAACTATTAGGATCAGTTCAAGGTTCATTAGATGTCcggcttaaaaaattttcggaaGAGAAACAAGAATTGCAAAAAGAAGTAACCAATCTGCAGCAACAATTGGCCGAAATTAAAACGCAACGAAGAGGCGGTTCGATGAATGGGCCAGTCGGAAATGATGATGAATGGGATGCGCAAAGGGAAGCTAACAAGCTGATATCAGAATATAAATATAAGCTACAAAAAGCTGAACAAGAAATTGCTAGTCTACAAGCCAGCTTAGCACGATCTGAGACGCAAGTTATACGATATAAGAGCACAGCGGAGGCAGCTGAAAAAGCTGAAGCGGAATTAAAAATTGAACGGAGGAAACTGCAGCGAGAGAACCGTGAAGCTATGGAACGTTTAGAAGAATTGGAAACATCGAATAATCATTTACTAAAGCGTCTAGACAAGCTAAAGAATGCCAAGAGTGCATTACTCAAAGACCTCTGA
- Protein Sequence
- MENIQAMELSDIESEVRSAKKTSKPERNNNVLIDSKNPASRNISQEELEINDNDEEFDFSDGDFNSGSEDDGDNETIHGCSDSEMNGDQMDTKRSSNNQANSVVNEAENLVLLEKQNANQNEEKRDGEETKGSFERNRSECDVESAEERFHRIDSTATDAKTEECHVSVSEEEDNVFCSGDEESDLLVTFLDKANEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRHTLSAGSARGSSSLSSRRSSEDSLEEEGRSLRDIRHELKEVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEENFAQLQREYKEKCRDHNALKRNLDKVEEELKLVRGQLEERDTLIAEQGLVIVMIENEDGSDAKRALVTVDNAQLLGSVQGSLDVRLKKFSEEKQELQKEVTNLQQQLAEIKTQRRGGSMNGPVGNDDEWDAQREANKLISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -