Basic Information

Gene Symbol
TIGD6
Assembly
GCA_954870665.1
Location
OX940877.1:14721149-14722826[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.4e-07 0.00016 22.5 0.0 6 39 29 61 25 65 0.91

Sequence Information

Coding Sequence
ATGTCAGATTTGTACCTATGGACATCAAAGATGCCTCGTAGTAAGGATGGAAAAACGCGACGTAAGCTGTGTCCAGAGACATCGTCTGAGGCAGTTAAAGAGGCAAGAAATGGATGTTCATTACGAAAAGttgcagaaaaatatgaaataccaAAATCTACGATATTTAAATACCTTCGCATGAATAAGGACAAGGATCTGGATCGTAACAGTGTAGATATTTTGAGAAATGACGTAAAGAAAGTATTCAATGAGGATGAAGAGAAACAGCTAgaagaatatttagaaaaagcaGCTTACCTACATATGGGATTAAATGTTAAGCAAGTCAGAGAACTGGCATACCAGTTTGCGGTGatgaagcaaaaacaaaatatcccaAATAGCTGGCACCAACACAAAATGGCTGGCATAGGCTGGCTAAGATACTATCGTCAACGTCATTCACATTTGTCTCTACGGAAGCCTGAAGCAACCAGTTTGGCACGAGCAAGTAGTTTTAACAGACCTAATGTTTCTAGGTTCTTTGACAACCtccaaaaagtaattgaaaaacacCAATTTACCCCCGAAAACATATATAATCTGGATGAGACTGGGATATCCACAGTTCATAATCCGAGAAAAGTGCTGgctccaaagaaaataaaacagctAGGTAAATTAACATCAGGGGAAAGAGGAGTAAATAACACCATGATTGCCTGTATAAATGCTGTTGGAAATTCAGTTCCCcctttgataatatttcctaGAGTTTTCTTTAAAGACAATATGTTAAAAGGTGCTCCTCCAGGTACGATTGGTGCAGCTAACCAATCCGGATGGTCAACTGAATTGATCTTCAGGAAATATCTGGATCATTTCATAAAGTTTGCAAAACCTACGAAAGAATGTCCGGTCCTCTTGTTAATGGACAACCATGAAACACATATCTCAATTGATATCATTGAAAAAGCCGTCGATAATGGTATAGTTCTGCTCACGTTGCCTCCACACACATCAGATAATTTACAACCTTTAGATCGTTGCGTTTTTGGACCATTTAAGGCGCAATACAACAAAGCAGCCGATAAATGGATGCTAAATCACCCTGGAAAACCTATCACAATTTACGACATTTCAGAAATTGTCGGTGATGCATATCCTCTTGCTTTCAcacccaaaaatattattaaaagtttCGAAGTAACAGGCATTTGCCCATTTAATAGAGATATATTCAGTGAAGAAGATTTTTTATGCTCATTTGTTACTAATCGACCCGAGCCATTGACCACAGTTTCAGATAATTGTACTCAAAGTCAATCTCTCACGGAAGGGTCGAAAATCATCTTCAACTGCAATCATGATGAAAATCTTAATGTCTACTCGGAGATACAACAACCCAATGATAGTGTAGAAGAGGTAATGCATATTGCTGGACCATCTGAAATTCGGCATACAAATCAGGATACAGAAACTCAGTCTACTGCTGTTTGTCTGTTTGATGCTGTTTggctgtttgtttgtttgatgagACTCGTGAAGATATGGAAAATGCACCAATCACTCCGAAAAAAGAGCTTCACAAAATAA
Protein Sequence
MSDLYLWTSKMPRSKDGKTRRKLCPETSSEAVKEARNGCSLRKVAEKYEIPKSTIFKYLRMNKDKDLDRNSVDILRNDVKKVFNEDEEKQLEEYLEKAAYLHMGLNVKQVRELAYQFAVMKQKQNIPNSWHQHKMAGIGWLRYYRQRHSHLSLRKPEATSLARASSFNRPNVSRFFDNLQKVIEKHQFTPENIYNLDETGISTVHNPRKVLAPKKIKQLGKLTSGERGVNNTMIACINAVGNSVPPLIIFPRVFFKDNMLKGAPPGTIGAANQSGWSTELIFRKYLDHFIKFAKPTKECPVLLLMDNHETHISIDIIEKAVDNGIVLLTLPPHTSDNLQPLDRCVFGPFKAQYNKAADKWMLNHPGKPITIYDISEIVGDAYPLAFTPKNIIKSFEVTGICPFNRDIFSEEDFLCSFVTNRPEPLTTVSDNCTQSQSLTEGSKIIFNCNHDENLNVYSEIQQPNDSVEEVMHIAGPSEIRHTNQDTETQSTAVCLFDAVWLFVCLMRLVKIWKMHQSLRKKSFTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00186100;
90% Identity
iTF_01375722;
80% Identity
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