Ssin001030.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940877.1:18429470-18432720[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-08 2.9e-06 28.0 0.0 2 39 25 61 24 65 0.94
Sequence Information
- Coding Sequence
- ATGTCAGATTTGTACCTATGGACATCAAAGATGCCTCGTAGTAAGGATGGAAAAACGCGACGTAAGCTGTGTCCAGAGACATTGTCTGAGGCAGTTAAAGAGGCAAGAAATGGATGTTCTTTACGAAAAGttgcagaaaaatatgaaataccaAAATCTACGATATTTAAATACCTTCGCATGAATAAGGACAAGGATCTGGATCGTAACAGTGTAGATATTTTGAGAAATGACGTAAAGAAAGTATTCAATGAGGATGAAGAGAAACAGCTAgaagaatatttagaaaaagcaGCTTACCTACATATGGGATTAAATGTTAAGCAAGTCAGAGAACTGGCATACCAGTTTGCGGTGatgaagcaaaaacaaaatatcccaAATAGCTGGCACCAACACAAAATGGCTGGCATAGGCTGGCTAAGATACTATCGTCAACGTCATTCACATTTGTCTCTACGGAAGCCTGAAGCAACCAGTTTGGCGCGAACAAGTAGTTTTAACAGACCTAATGTTTCTAAGTTCTTTGACAACCttcaaaaagtaattgaaaaacacCAATTTACCCACGAAAACATATATAATCTGGATGAGACTGGGATATCCACAGTTCATAATCCGAGAAAAGTGCTGgctccaaagaaaataaaacagctAGGTAAATTAACATCAGGAGTAAGAGGAGTAAATAACACCATGATTGCCTGTATAAATGCTGTTGGAAATTCAGTTCCCcctttgataatatttcctaGAGTTTTCTTTAAAGACAATATGTTAAAAGGTGCTCCTCTAGGTACGATTGGTGCAGCTAACCAATCCGGATGGTCAACTGAATTGATCTTCAGGAAATATCTGGATCATTTCATAAAGTTTGCAAAACCTACGAAAGAATGTCCGGTCCTCTTGTTAATGGACAACCATGAAACACATATCTCAATTGATATCATTGAAAAAGCCGTCGATAATGGTATAGTTCTGCTCACGTTGCCTCCACACACATCAGATAATTTACAACCTTTAGATCGTTGCGTTTTTGGACCATTTAAGGCGCAATACAACAAAGCAGCCGATAAATGGATGCTAAATCACCCTGGAAAACCTATCACAATTTACGACATTTCAGAAATTGTCGGTGATGCATATCCTCTTGCTTTCAcacccaaaaatattattaaaagtttCGAAGTAACAGGCATTTGCCCATTTAATAGAGATATATTCAGTGAAGAAGATTTTTTATGCTCATTTGTTACTGATCGACCCGAGCCATTGACCACAGTTTCAGATAATTGTACTCAAAGTCAATCTCTCACGGAAGGGTCGAAAATCATCTTCAACTGCAATCATGATGAAAATCTTAATGTCTACTCGGAGATACAACAACCCAATGATAGTGTAGAAGAGGTAATGCATATTGCTGGACCATCTGAAATTCGGCATTCAAATCAGGATACAGAAACTCAGTCTACTGCTGTTTGTCAGTTCTCTCTGGATGAGACTCGTGAAGATATGGAAAATGCACCAATCACTCCGAAAAAAGAGCTTCACAAAATAACGCCGGAATCTGTATGCCCGTTTCTAAAAGCAGACCCTCGAAAAGCAGCTAGACGAGGAAGGAAACCTGGAAAGAGTAGAATTTTAACTGATACacctgaaataaatgaaataaagaacgaagcaattaataaagcagaaaaaaaaagaaaaatagaagaaaagaaaaaaaataagaaaaaagatataccgaaaaagacaaaaaaatcctcaaaaggGCTACCAAAGGTCGGCGTTAGCGAAAAGAACATCTCAtctgcagaaaaaaaagtcacaattCTGGATGACGAGCGATACGCGCGAAAAACGGTTTGCGCTGCTGTTTGCAAACCTGCAGCGGAATGGTCCTTTATTATCGATGTGCATAGTCAGCCTAACGAAAAATTGCTATAA
- Protein Sequence
- MSDLYLWTSKMPRSKDGKTRRKLCPETLSEAVKEARNGCSLRKVAEKYEIPKSTIFKYLRMNKDKDLDRNSVDILRNDVKKVFNEDEEKQLEEYLEKAAYLHMGLNVKQVRELAYQFAVMKQKQNIPNSWHQHKMAGIGWLRYYRQRHSHLSLRKPEATSLARTSSFNRPNVSKFFDNLQKVIEKHQFTHENIYNLDETGISTVHNPRKVLAPKKIKQLGKLTSGVRGVNNTMIACINAVGNSVPPLIIFPRVFFKDNMLKGAPLGTIGAANQSGWSTELIFRKYLDHFIKFAKPTKECPVLLLMDNHETHISIDIIEKAVDNGIVLLTLPPHTSDNLQPLDRCVFGPFKAQYNKAADKWMLNHPGKPITIYDISEIVGDAYPLAFTPKNIIKSFEVTGICPFNRDIFSEEDFLCSFVTDRPEPLTTVSDNCTQSQSLTEGSKIIFNCNHDENLNVYSEIQQPNDSVEEVMHIAGPSEIRHSNQDTETQSTAVCQFSLDETREDMENAPITPKKELHKITPESVCPFLKADPRKAARRGRKPGKSRILTDTPEINEIKNEAINKAEKKRKIEEKKKNKKKDIPKKTKKSSKGLPKVGVSEKNISSAEKKVTILDDERYARKTVCAAVCKPAAEWSFIIDVHSQPNEKLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375724;
- 90% Identity
- iTF_01375717; iTF_01375719; iTF_01375724; iTF_01375744;
- 80% Identity
- -