Scal008740.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- -
- Assembly
- GCA_001015335.1
- Location
- NW:208076-209949[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0015 6.7 6.5 0.2 26 48 251 273 229 276 0.82 2 7 5.3e-06 0.024 14.4 0.5 22 47 277 302 273 306 0.90 3 7 0.86 3.9e+03 -2.3 0.0 17 33 364 380 359 400 0.66 4 7 0.68 3.1e+03 -2.0 0.0 18 31 393 406 390 418 0.79 5 7 0.0033 15 5.4 0.1 21 45 424 448 416 456 0.87 6 7 0.22 1e+03 -0.4 0.1 21 43 452 474 446 479 0.80 7 7 0.0012 5.5 6.8 0.1 21 48 480 508 474 511 0.85
Sequence Information
- Coding Sequence
- atgtATGAAAATACCTATAGTTTCCGGAATCAGTGTCGCACCTgcttaaatcaaataaaaggctTGCAAGCACTATCAACATTTACAGTTGTCGAGCAACTCAAGGAAATGACTTATGCCGAAATACTAAAGGAAGTTGCAAACATAAATATCACAGAGGAACAAAATTTAGAAATGCCACAGTACATTTGTAGCTGTTGTTCCCGAAAATTGATGTCCTCCCATGCGTTCATCAGACAGGCCAAggaaacaaatgcaaaatgttTGGCAATGCTGAAGGGCGGCAGGTTGATGGTGGGCAACAACGATGGGCGAAAGTTGGACTGTCTGCAGGAGTCTGAAATTGAGTTACATCAATGTGTTGAAATAAAGATAGAAAAAGATGAAAGCGGACAAAAAGTTATTGAGGATATGGCAGATATTGTTGAACATTCTGTGAGTCAAATGGTGCTTAAGAAAGAGTTTTCCAATGAGACTGCTCTAAAAGGGCAACTTAATGCTGACGACCTCCACGAAACGAACGTTATGGAAAGCTCAAATACACAAGCgaaGATGTCAGACCATGATAACGAAGATTCCGACGCATCTAGAAAATGTGATGAGTATGTCTCTGAAACAGAGATAGAAGAATATATCATATCCAACGATTCAAGCTGTTCGAAGAAAACCTGCCGCAATTCCctggaaaaagaaacaaaaaaatctctATCTAAGTCCTATGAAGACAAGGAAGACGATGATATTGCTGTTCCTTGCACGCagtgcaataaaattttcagcaattCCAGGGAATTAGCACGCCATTTACGCAATACTCATGTACCAGAGGAACAAAAATGTACATGTCCCATATGTGGTGCCAAATTTACGCGTTCCTGTAATATGTACAAGCACATGCGAACATTGCATGATCCAGAATCAGTGAAAGTGTTATTGCCAGCAAGAGAAAAAGTCCATCAATGCGATAAATGTCCcagaaaatatacaaaaaagaaacatttaaattttcacataaGGGCTAAACACAATGGTGTCGAAAACCAAGAGAAATCTGAAATGGTGGAGGTGGCGACGACAAGCGCTGTGGATTCTAAGAGAAAATCTGAACTTCGTCCATTGTGCTTTATATGCGGCGGTTCATTTTCCAACAAAGCCCATTTGATTGTTCACATGCGTCGGCACACTGGAGAAAAACCATTCAAATGTGATTTGTGTGATAAGGCCTTTCCTCGTATTTCCGAACTGACTTGCCATCGCCGCATACACACTGGCGAGAAGCCTTATAAATGCAAAATATGTGAGAAAACTTTCCGGGTCTCAACCAAATTAGCTACCCACATGCGATCTCATACAAATGAGAGACCATATAAGTGTAAACAGTGTGAGCGTAGTTTTAAATACTCCAAGGATTTGAATATCCACCATCGAATACATACAGGAGAACGGCCGTATCTGTGTACTATCTGTGGCAGTACTTTTACTCAAAGCAATTCACTTAAGGCCCATCGTATGAAATTGGGACATATGGAAGataatgtttaa
- Protein Sequence
- MYENTYSFRNQCRTCLNQIKGLQALSTFTVVEQLKEMTYAEILKEVANINITEEQNLEMPQYICSCCSRKLMSSHAFIRQAKETNAKCLAMLKGGRLMVGNNDGRKLDCLQESEIELHQCVEIKIEKDESGQKVIEDMADIVEHSVSQMVLKKEFSNETALKGQLNADDLHETNVMESSNTQAKMSDHDNEDSDASRKCDEYVSETEIEEYIISNDSSCSKKTCRNSLEKETKKSLSKSYEDKEDDDIAVPCTQCNKIFSNSRELARHLRNTHVPEEQKCTCPICGAKFTRSCNMYKHMRTLHDPESVKVLLPAREKVHQCDKCPRKYTKKKHLNFHIRAKHNGVENQEKSEMVEVATTSAVDSKRKSELRPLCFICGGSFSNKAHLIVHMRRHTGEKPFKCDLCDKAFPRISELTCHRRIHTGEKPYKCKICEKTFRVSTKLATHMRSHTNERPYKCKQCERSFKYSKDLNIHHRIHTGERPYLCTICGSTFTQSNSLKAHRMKLGHMEDNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375136;
- 90% Identity
- iTF_01375136;
- 80% Identity
- iTF_01375136;