Basic Information

Insect: Stomoxys calcitrans
Gene Symbol: -
Assembly: GCA_001015335.1
Location: NW:78899-82793[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00022 0.01 15.9 3.4 1 23 394 417 394 417 0.97

2 9 3.3e-05 0.0015 18.5 0.7 1 23 424 447 424 447 0.97

3 9 6.8e-05 0.0031 17.5 0.6 1 23 454 479 454 479 0.97

4 9 2.1e-07 9.6e-06 25.4 1.4 1 23 488 511 488 511 0.98

5 9 2.6e-05 0.0012 18.8 1.3 2 23 528 550 527 550 0.95

6 9 0.00012 0.0057 16.7 0.3 1 23 556 578 556 578 0.98

7 9 0.0001 0.0048 16.9 0.1 3 23 585 606 583 606 0.94

8 9 0.00029 0.013 15.5 5.0 1 23 612 634 612 634 0.97

9 9 7.1e-06 0.00033 20.6 1.1 1 23 640 662 640 662 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00022	0.01	15.9	3.4	1	23	394	417	394	417	0.97
2	9	3.3e-05	0.0015	18.5	0.7	1	23	424	447	424	447	0.97
3	9	6.8e-05	0.0031	17.5	0.6	1	23	454	479	454	479	0.97
4	9	2.1e-07	9.6e-06	25.4	1.4	1	23	488	511	488	511	0.98
5	9	2.6e-05	0.0012	18.8	1.3	2	23	528	550	527	550	0.95
6	9	0.00012	0.0057	16.7	0.3	1	23	556	578	556	578	0.98
7	9	0.0001	0.0048	16.9	0.1	3	23	585	606	583	606	0.94
8	9	0.00029	0.013	15.5	5.0	1	23	612	634	612	634	0.97
9	9	7.1e-06	0.00033	20.6	1.1	1	23	640	662	640	662	0.98

Sequence Information

Coding Sequence: ATGTCGTCGGCTTTAACAAAGATCAATGCTAAGGAACGCTGTCGCACATGCCTAAGCAAATTAATCAAAAACGAAGTAAGTCTGGAAGATGTCGACTCGggaaaaaatttcgtttgtgTTAATTCCAATCCTGAATTGAGGGATCTTTTGGACAAATATGTGGGTATTGAAGGTGATGAGGAGACAAATCAGGATAAAGACTACCCAGCCAGTGTGTGCATCAGTTGTATGAGACAATTGCAACATTTTGAGGCATTCCGCAATAAAGCCCTAGATAGTGCTGAAAAGCTGTTCCGAGTTTTTCGTGGTACCGACGAATGTAAAATCGAATTGGATGATAATGGAGTATCCATGCCTTGTAAGGCCTTACAAGTACAATTGAAGACGGGAAAAGAAGCCGAAAATGATATATTCAATTTGCTGCTAAAAGATTCCTTAATGGAAACTGAAGCCATTTTATTGGACGGAGTCGAAAGCGACAATGTTATTAACAATATGGATCCCGATCCGTTTCAAACTGAAATTGATGGAAATAAACGTAAATGTAGGAAGACAAAACGAAAAGAGGATTCATCTTTGCcagaaaatcataacaaatctAACAGAAAAAGAAAACGCATAAAAGCAAGCGAAAAAAGTGGGCATGATAACAAAGATGATGTGGCAGACAGGGAAAAAGATCACTTTCAAGCGAATTTGTTGGAAAATTCGGATAAAGGCAATGAAATCGACTGTGAAGTTAAGGTAAAAGAACTTGATGAAGACTATGAAGACTGGCAACATATGGATTTCCATACGAACGATGACAATGATAGCTCTGACAATGAAGTATTAAGCAAGAAGATACAAAATTCCCGCAAAGTTCTAAAGAAAACTATGAAAAAAGCCCCAAAAACCGAACCTGGGGAGGAATATGAGGAGGAAAATGCTGATTCCGATTCAGACTTTGTACTAGAATCCATGAGAAAAAgtggagaaataaaaaaatctccCAATGATACAGATGATATGCACGAAAGTGAATTCAAAGATTTGGATGATTataaaactgaattggaatccGATAGTATATCATCAGAATCCGATTTTGAAGTAAAAACtgagaaaaaacaaaagtctTCCTTTTCGCCTGGCAAACGATCGGCGGCCAGTGGACGTAAAAAAGGTCTTACCAATAGCCATAAATGTGATCAATGCAACCGTAGATTCGCCCACAAAGTAACACTCGATGCCCATGTTCGAAAAATACATCAAGGAGAGAAAAGAGCTTACAAATGTGAGCTATGTGACAAGTCGTATTCGTTTATGGGAGGCTTATCGACTCACATGCGGGAAACCCATGAGCGCCAAGAAGAGGCGTATAGCTGTAAAATACCCGGTTGCGATAAGAAGTACACCAGTTACATCACATTACAGCGTCATGTTCGTGTTAAGCATCTTATGAGTGAGGTACCCACCAGATTTGTGTGTGAACAATGTGGAGCTACATTCAAACAAACGTCAAATTTGCGATATCACATGAGAACTCGTCATCCCACTGAAGATGATTTGAAGcaaaaagaaattataaagGAACGTTTAGAATGTGAAATCTGTAAAAAGTCCTTTAACTCGCAATATACACTAAAATATCATAAACTTCGCATACATGCCGACGATAAAAAGTATGAGTGCAAAATTTGTGGCAGACGCGTTGCCAAGAAGTTCATGTTGGATCAACATATGCTGGTACATTCCGAAGACAAGACCGCGTGCAAATTTTGCGGACGAGAATTTGTGCGCAAGTATCAAGTAGAGGCGCACATTAAGGCCGTCCACCAAAAGTTAAAACCATTTCAATGTTCACACTGCAGCGAAAGTTTTGCATCGAGAAAAACTTTGCGTCACCATGTTTACATACATACTGGAGAAAAGCCTTACGTATGTGATATATGCGGTCAGGCGTACCGACAACCAACTTGTCTAAAAAATCACCGTAAAATACACAATAAAGCAAATAGTAGTAATACTAGCAATAACGGCAATATAAACCAAGAACCTGATGGAGCAGCCGCGgctgctgctgcagcagcaATTGCCAATCGAAATTTTATAAACACCTTAATGCAAGGCAATGAAAATGTAATGGATGGAGATGCCTTAGGCCTTAATTAA
Protein Sequence: MSSALTKINAKERCRTCLSKLIKNEVSLEDVDSGKNFVCVNSNPELRDLLDKYVGIEGDEETNQDKDYPASVCISCMRQLQHFEAFRNKALDSAEKLFRVFRGTDECKIELDDNGVSMPCKALQVQLKTGKEAENDIFNLLLKDSLMETEAILLDGVESDNVINNMDPDPFQTEIDGNKRKCRKTKRKEDSSLPENHNKSNRKRKRIKASEKSGHDNKDDVADREKDHFQANLLENSDKGNEIDCEVKVKELDEDYEDWQHMDFHTNDDNDSSDNEVLSKKIQNSRKVLKKTMKKAPKTEPGEEYEEENADSDSDFVLESMRKSGEIKKSPNDTDDMHESEFKDLDDYKTELESDSISSESDFEVKTEKKQKSSFSPGKRSAASGRKKGLTNSHKCDQCNRRFAHKVTLDAHVRKIHQGEKRAYKCELCDKSYSFMGGLSTHMRETHERQEEAYSCKIPGCDKKYTSYITLQRHVRVKHLMSEVPTRFVCEQCGATFKQTSNLRYHMRTRHPTEDDLKQKEIIKERLECEICKKSFNSQYTLKYHKLRIHADDKKYECKICGRRVAKKFMLDQHMLVHSEDKTACKFCGREFVRKYQVEAHIKAVHQKLKPFQCSHCSESFASRKTLRHHVYIHTGEKPYVCDICGQAYRQPTCLKNHRKIHNKANSSNTSNNGNINQEPDGAAAAAAAAAIANRNFINTLMQGNENVMDGDALGLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01375083;
90% Identity: iTF_01375083;
80% Identity: iTF_01375083;