Scal001686.1
Basic Information
- Insect
- Stomoxys calcitrans
- Gene Symbol
- lolal
- Assembly
- GCA_001015335.1
- Location
- NW:553215-826737[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.5e-11 6.1e-08 31.9 0.0 1 38 631 669 631 674 0.89 2 4 1.1e-13 1.9e-10 39.9 0.0 2 39 686 723 685 726 0.94 3 4 1.3e-17 2.2e-14 52.5 0.0 1 45 740 785 740 785 0.98 4 4 1.3e-19 2.2e-16 58.9 0.0 1 45 792 837 792 837 0.97
Sequence Information
- Coding Sequence
- ATGGCTCAACGAAGTCATCAATATTTTAGTTTACGATGGAACAACTATCAGAACACCATGACTTCGGTGTTTCAGCAACTGCGTGAGGACTTGTCATTCGTCGATGTCACTCTATCATGTGAACACGGTTCACTCAAAGCCCACAAGGTGGTGCTATCCGCTTGTTCGTCATACTTTCAAAAGCTATTGCTTGAGAACCCCTGCAAACATCCGACCATCATATTGCCAGGCGATATCATTTTCACCGATCTGAAAACCATAATCGATTTTGTATATCGCGGTGAAATAGATGTTACAGAATCGGAATTACAGGGTCTCTTGCGTACTGCTGAACAGTTGAAAATTAAAGGTCTCTGTGAAACTGCAGAGAATGCCGATGACCTGAATGATGCTGCCACAGCTACAATAACCGTTTCAGAAAATATACAACAAGCCGTTGTTGGCAATATTGTCAATGCAACGGTAGTACCCGGACAACCCTCACCGCCCATACCCCACCAGCAtcatcagcaacagcagcaacagcaacagcaccagcagcagcaacaacaacagattaGTACTGCTGTCCTAACACATGCCGTTAGTCCGAACAGTGCCCAACAATTGGCAGCTGCCGGACAATTGGTAACCTCAACACCCACCTCGTCCCAACCACAGCAACACCAGCAATTGGGCCGCAAATCAAGAGTACGTAAACGTTCGAAATCTCCGGATCTAATTTTATCACATCACGAACAGGCTCAGCAACAACAGAATCAACAGCATCCCCAAGCCATACTAATACAGAATCAAAATCAAACGGCAATCGTTAGTCTCCAACAGACATCGGCTGGAAACTATATTCCGGTGTCAGGGGTACAAACGGTTACTACAAGTGTAGCGGGTggccagcaacagcaacagggCGGCACAACAATAGTGACGACAGGCGAAGATTCTGATACCGAGAAGCCGACATTGCAGAAAATTTGCAAGACTGAAGCATCATCAGCTTCACCAGCGTCCGCGTCCTCGGCATCGGCGTCAAATAATGCTGGCGGTGTAACAACAGTAGCAGCACCTGGAACAGCAATTGTAACACAAATTGTAGTAGCTAGAGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGAGGAATTCTGGGAGTACCCATGGGTTTCCTCGATTTCGCCCCCGAACCACCGGCACCATCAGCAACACCAGTTACGGTAACAGAGCACGTGGACCTGTCATGTAATCCGAGTACGGATACCCGAGATTTATCAAatCCCTCGGAACCGCTCGATATAGACAATCATTTGGCCCAACACATGATACAACGGCTCGATCAATCTCCCATGCACTCCATGCACCATCAGACCGGTGACGAATCAAATTCAAATCTGGTCCAACATATTAAAAGCGAAGTACTCGATGCCAAACAACAGCAGCAGgttcagcaacagcaacaggcAGCTGCAGCTGCTGCCGCCCACCATCAAGCTCAACAGCAACAGCTGCATGCGCAGCAAATGGCAGCGGCGCAAAGCCAAAgtcaccagcagcagcagcagtctcATCAGCAGCAACAATCGCACCAGCAACACCATCAACAGTCCcaccagcaacagcagcatcatcaGGATATAACGGGAGCCACGGTGATGGAGATTGATCCGAGCCAAATAAAGCATGAACCGGGCATGATAATTACGCCTGAAATTGTAAATATGATGACCACCGGGCATATGGATATGTATAATTCTGATACGAGCGATGATTCTATGATGATTGCCAACGGCTCGCCACATGATCAAAACGAACCGCACTATACCAATTTAGATCAGCAGCATGGTGGAGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGTCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCCACAACCCTATGGCAACGAGCCCATCGCATGGGCATCGAGACACCTAAGAAGGAAGGAGGCACCAAATCATGGAATGAAGACTCACTTAACAATGCTTTGGAAGCGTTGCGTTCTGGACAAATATCAGCGAATAAAGCATCGAAAGCCTTTGGCATACCTTCATCGACGCTCTATAAGATAGCACGACGTGAGGGTATACGATTGGCAGCGCCTTTCAATGCCGCACCAACAACATGGACTCCGGAAGACTTGGAGCGAGCATTAGAGGCCATTCGTGCGGGTCATACATCGGTGCAGAAGGCAAGTGCCGAGTTTGGTATACCCACAGGCACTCTGTACGGTCGTTGTAAACGTGAAGGCATCGAGTTATCTCGATCGAATCCTACTCCATGGTCTGAAGATGCTATGAACGAAGCGTTGAATTCAGTGCGtatTGGCCAAATGTCCATCAACCAGGCTGCTATTCACTACAATCTACCCTATAGCTCTTTGTATGGGCGATTTAAACGTGGTAAATATGATGTGTCAAATACGAGTGGAACTTCGCTGAATAACACATCGGGCAATACGTCGGGTAGCATTGAAATTATCGAACATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCCTCGCCGCATCAGCACGGTGGCAGTAGTACACCGCAACAAAGCCAAACCCCACAACATTTACAGCAGCACGTAGTGCATatacaacagcaacatcatcagCAGCAACCGCAACATGCGCAACATATCCAGCAGCAGCAAGATGTTGTCACCTCATCCAGTCAACAAGTTCAACAACAGCACGCCAGCAATTCAGCAGCAGCCGCGGCctcgcagcagcagcaacaacagcagcagcaacagcaacagattCAACAAATCTATCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MAQRSHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSSYFQKLLLENPCKHPTIILPGDIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATVVPGQPSPPIPHQHHQQQQQQQQHQQQQQQQISTAVLTHAVSPNSAQQLAAAGQLVTSTPTSSQPQQHQQLGRKSRVRKRSKSPDLILSHHEQAQQQQNQQHPQAILIQNQNQTAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQQQQQGGTTIVTTGEDSDTEKPTLQKICKTEASSASPASASSASASNNAGGVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHSMHHQTGDESNSNLVQHIKSEVLDAKQQQQVQQQQQAAAAAAAHHQAQQQQLHAQQMAAAQSQSHQQQQQSHQQQQSHQQHHQQSHQQQQHHQDITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNTSGTSLNNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQHGGSSTPQQSQTPQHLQQHVVHIQQQHHQQQPQHAQHIQQQQDVVTSSSQQVQQQHASNSAAAAASQQQQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00679396;
- 80% Identity
- iTF_01375042;