Slun024522.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010004077.1:19206-28888[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0077 29 5.4 0.3 22 43 81 102 71 108 0.88 2 8 0.012 43 4.8 0.0 23 48 109 134 103 137 0.88 3 8 0.00013 0.49 11.1 0.1 25 46 140 161 134 166 0.86 4 8 0.95 3.5e+03 -1.3 0.1 16 25 176 185 163 195 0.62 5 8 0.00072 2.7 8.7 0.1 22 44 231 253 221 257 0.90 6 8 0.022 80 4.0 0.0 26 45 262 281 253 287 0.85 7 8 0.002 7.3 7.3 0.1 22 46 287 311 284 313 0.86 8 8 0.28 1e+03 0.4 0.1 26 48 319 341 313 343 0.85
Sequence Information
- Coding Sequence
- ATGAAATTGGAGAATTTTGCAAATGATCAAAGCGCATGGAATTCTAAAATATATGCTCGGCCCTTGACCTTAGCAGGTTGTAAATATAGGCCATTAAAATTTAACGAGGAAATTAAATTCAAACGTCATGTCCAAAACGCACACAAATCCGTAAAATATAATGTTTGCGATGTGTGCGGTCAAAAGTTCAAAAATAAAGAATCCTTTCAACGTCATTACGCCCaacatcaaggcgtcatcgagccaccggcccaatgttccatatgccttcgatggcttaagaatcaaaacagcttaagattacatcgtttcacacaCGAAACAAATCCAACGGCATGCAAGGTATGCGGAAAAATATTTGATGCCAAGCACCGGCTGCGCAAACACATGTCCTATTGGCACAAGTCCGATTTGAACTTGAAGTGTCAATTTTGTGAGAAAGTCTTTCGTCAGGAGCGCAATCTTCaggaacatatggctatacatacggggcaacagctctacagctgtccgcattgtcaaaaagaatcacgctccaagtcaaatatATGTGCAACTATATATCGTCTGCGCAATCACATTGCCTCCGTACACAATAATATCTATCATCATATTTGTGATATTTGCGGTAAGAAATTCAAATCAAAGACATCTTTCCAGAAGCACTATGACGAACACCAGGGCATAGTTGAGCCGCCAGCACAATGTACCATCTGTGGGGCATGGTTGAAAAATCAACACAGCCTTCGTGTGCACCATCAAACGCACGAGGACACACAATTTGCCTGCGATATTTGTGGTAAATTTTTCAAGACCAAAAAGAATCTAAGCCGCCACAAGGGCTATTGGCATCGACGTGAACGCAATCTTTCGTGTAGCTATTGCGACAAGGTGTTTCGTGAGAAACGCAATCTGGACgagcacatggccatgcatacagatacgaatctctatacgtgtccacactgtggcaaagagtcgagatctaaatcgaatatgtatgttcatataaagagacaacatcctgatgaatggtggaaatcgaaGCAGGAACGTTATAAGTTAAAGCCCGAAGGAGAAGAAGAAGAAACGGGAGGCGGCGATATTGAGGCAGCTGATAAGACGTCGTCAGTAGTGGACACATCTGCAGTATCGATAGCACAGGAATGTATAAATCCGGATTAA
- Protein Sequence
- MKLENFANDQSAWNSKIYARPLTLAGCKYRPLKFNEEIKFKRHVQNAHKSVKYNVCDVCGQKFKNKESFQRHYAQHQGVIEPPAQCSICLRWLKNQNSLRLHRFTHETNPTACKVCGKIFDAKHRLRKHMSYWHKSDLNLKCQFCEKVFRQERNLQEHMAIHTGQQLYSCPHCQKESRSKSNICATIYRLRNHIASVHNNIYHHICDICGKKFKSKTSFQKHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQERYKLKPEGEEEETGGGDIEAADKTSSVVDTSAVSIAQECINPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01174465;
- 90% Identity
- iTF_01374314;
- 80% Identity
- iTF_01374314;