Sbis103104.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010001750.1:80297-84938[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0028 52 7.0 0.2 51 68 51 68 47 70 0.81 2 8 0.0028 53 7.0 0.4 50 67 91 108 76 110 0.77 3 8 0.0062 1.2e+02 5.9 1.4 50 68 132 150 119 152 0.77 4 8 0.0031 58 6.9 0.4 50 67 173 190 160 192 0.77 5 8 0.0031 58 6.9 0.4 50 67 214 231 201 233 0.77 6 8 0.0031 58 6.9 0.4 50 67 255 272 242 274 0.77 7 8 0.0031 58 6.9 0.4 50 67 296 313 283 315 0.77 8 8 0.0024 45 7.3 0.4 50 68 337 355 324 357 0.77
Sequence Information
- Coding Sequence
- ATGATAGATGGTTCCTCGAGTCACCTAGTGGCACAAATGATTGCCATCGCAGGTGGAAGTACTTTCGGCACCCCGTCACAAAGAGAAAGGGGGAGGAGCTTCCCAAACTTGCATGATCCACAACAATATGGCAATGGTGTAAAATGGAAGCAGAAGGAAAGTGCTCCTCACTTCTGTAACAACTGTAACACCGTACTCTATCGTACAGTACCTAGCtttgttaaaatacaacataCCACAGTAGTGACTGTCTGTGCAAATGGATTAGGGAAGCAGAAGGAAAGGGCTCCTCACTTCTGTAACAACTGTAACACCGTACTCAATCGTACAGTACCTGGCTTTGTTAAGGTAGAACATACCACAGTAGTGACTGTCTGTGCAAATGGATTAGGGAAGCAGAAGGAAAGTGCTCCTCACTTCTGTAACAACTGTAACACCGTACTCTGTCGTACAGTACCTGGCTTTGTTAAGGTAGAACATACCACAGTAGTGACTGTCTGTGCAAATGGATTAGGGAAGCAGAAGGAAAGGGCTCCTCACTTCTGTAACAACTGTAACACCGTACTCAATCGTACAGTACCTGGCTTTGTTAAGGTAGAACATACCACAGTAGTGACTGTCTGTGCAAATGGATTAGGGAAGCAGAAGGAAAGGGCTCCTCACTTCTGTAACAACTGTAACACCGTACTCAATCGTACAGTACCTGGCTTTGTTAAGGTAGAACATACCACAGTAGTGACTGTCTGTGCAAATGGATTAGGGAAGCAGAAGGAAAGGGCTCCTCACTTCTGTAACAACTGTAACACCGTACTCAATCGTACAGTACCTGGCTTTGTTAAGGTAGAACATACCACAGTAGTGACTGTCTGTGCAAATGGATTAGGGAAGCAGAAGGAAAGGGCTCCTCACTTCTGTAACAACTGTAACACCGTACTCAATCGTACAGTACCTGGCTTTGTTAAGGTAGAACATACCACAGTAGTGACTGTCTGTGCAAATGGATTAGGGAAGCAGAAGGAAAGGGCTCCTCACTTCTGTAACAACTGTAACACCGTACTCTATCGTACAGTACCTGGCATTGTTAAGGTAAAACATACCACAGTAGTGACTGTCTGTACAGTTGGATTACGGTAA
- Protein Sequence
- MIDGSSSHLVAQMIAIAGGSTFGTPSQRERGRSFPNLHDPQQYGNGVKWKQKESAPHFCNNCNTVLYRTVPSFVKIQHTTVVTVCANGLGKQKERAPHFCNNCNTVLNRTVPGFVKVEHTTVVTVCANGLGKQKESAPHFCNNCNTVLCRTVPGFVKVEHTTVVTVCANGLGKQKERAPHFCNNCNTVLNRTVPGFVKVEHTTVVTVCANGLGKQKERAPHFCNNCNTVLNRTVPGFVKVEHTTVVTVCANGLGKQKERAPHFCNNCNTVLNRTVPGFVKVEHTTVVTVCANGLGKQKERAPHFCNNCNTVLNRTVPGFVKVEHTTVVTVCANGLGKQKERAPHFCNNCNTVLYRTVPGIVKVKHTTVVTVCTVGLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -