Sbis125797.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010004684.1:8888-10496[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0062 1.2e+02 5.9 0.4 3 28 67 92 65 100 0.80 2 7 0.0013 24 8.1 0.3 2 28 104 130 103 138 0.84 3 7 0.0013 24 8.1 0.3 2 28 142 168 141 176 0.84 4 7 0.0013 24 8.1 0.3 2 28 180 206 179 214 0.84 5 7 0.0013 24 8.1 0.3 2 28 218 244 217 252 0.84 6 7 0.0012 22 8.3 0.4 2 29 256 283 255 290 0.84 7 7 0.0024 45 7.3 0.5 2 25 294 317 293 322 0.86
Sequence Information
- Coding Sequence
- ATGTGTCGGCAGACTTCCGCGGGTGGGATGTGGGTCAGCCGGCAGAGGCTGGGCGGTGCGCGGGAACGGCGCGTCGATCGATACAGTGGGCCCAGCTCCGATGTCTGCCGACAGAATGCGCCAGACACCTGCCTAGACAACACGGCTACAGATCTATATGTGATTCTATGGCACTCATTAGTCTACCGTAGAGCACAACAGTATCACAGTGTATGTCATCAGTGTACCCGACACGACACCACTACACTACAGGCTACAGTGACAGATCTATATGTGATTCTATGGCACTCATTAGTCTACCGTAGAGCACAACCGTATCACAGTGTATGTCATCAGTGTACCCGACACGACACCACTACACTACAGGCTACAGTGACAGATCTATATGTGATTCTATGGCACTCATTAGTCTACCGTAGAGCACAACCGTATCACAGTGTATGTCATCAGTGTACCCGACACGACACCACTACACTACAGGCTACAGTGACAGATCTATATGTGATTCTATGGCACTCATTAGTCTACCGTAGAGCACAACCGTATCACAGTGTATGTCATCAGTGTACCCGACACGACACCACTACACTACAGGCTACAGTGACAGATCTATATGTGATTCTATGGCACTCATTAGTCTACCGTAGAGCACAACCGTATCACAGTGTATGTCATCAGTGTACCCGACACGACACCACTACACTACAGGCTACAGTGACAGATCTATATGTGATTCTATGGCACTCATTAGTCTACCGTAGAGCACAACCGTATCACAGTGTATGTCATCAGTGTACCCGACACGACACCACTACACTACAGGCTACAGTGACAGATCTACATGTGATACTATGGCACTCATTAGTCTACCGTAGAGCACAACCGTATCACAGTGTATGTCATCAGTGTACCCGACACGACACCACTACACTACAGGCTACAGTGACAGATCTATATGTGATTCTATGA
- Protein Sequence
- MCRQTSAGGMWVSRQRLGGARERRVDRYSGPSSDVCRQNAPDTCLDNTATDLYVILWHSLVYRRAQQYHSVCHQCTRHDTTTLQATVTDLYVILWHSLVYRRAQPYHSVCHQCTRHDTTTLQATVTDLYVILWHSLVYRRAQPYHSVCHQCTRHDTTTLQATVTDLYVILWHSLVYRRAQPYHSVCHQCTRHDTTTLQATVTDLYVILWHSLVYRRAQPYHSVCHQCTRHDTTTLQATVTDLYVILWHSLVYRRAQPYHSVCHQCTRHDTTTLQATVTDLHVILWHSLVYRRAQPYHSVCHQCTRHDTTTLQATVTDLYVIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -