Sbis048442.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000210.1:1111376-1118448[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.58 2.1e+03 1.3 0.0 39 53 12 26 10 36 0.92 2 9 0.086 3.2e+02 4.0 0.0 39 53 69 83 47 97 0.59 3 9 2.8 1e+04 -0.8 0.0 39 53 91 105 86 112 0.91 4 9 0.16 6e+02 3.1 0.0 39 56 113 130 108 139 0.90 5 9 0.092 3.4e+02 3.9 0.0 39 49 170 180 147 191 0.53 6 9 0.21 7.7e+02 2.8 0.0 39 55 192 208 187 214 0.91 7 9 0.16 5.9e+02 3.1 0.0 39 56 214 231 209 242 0.90 8 9 0.055 2e+02 4.6 0.0 39 53 271 285 248 313 0.59 9 9 0.12 4.3e+02 3.6 0.0 39 55 337 353 313 376 0.78
Sequence Information
- Coding Sequence
- ATGCAGTACATTTTATCGTACCAGTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTATCGTACCAGTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTCGATCAGTGTGGTTTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTATCATACCAGTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTAGATCAATGTGGTCTTAAAATCTCACAGGCTGTTGACTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTTGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTAGATCAATGTGGTCTTAAAATCTCACAGGCTGTTGACTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTTGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTATCATACCAGTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACGTTATGCAGTACATTTTTTCATACCAGTTCGATCAGTGTGGTCTTAAAATCTCACAGGCTGTTGACTGTTACGATTTAACGAACGAGACATATTTAATACGCCCTCCAGATGAAGTACTGTGTTACGATTTAACGAACGAGACATATTTAATACGCCCTCCAGATGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCTCTCCAGCTGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCTCTCCAGCTGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCTCTCCAGCTGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCCCTCCAGATGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGGCCTCCAGATGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCTCTCCAGATGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCTCTCCAGATGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCTCTCCAGATGAAATACTGTGTTACGATTCAACGAACGAAACATATTTAATACGCTCTCCAGATGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATATGCTCTCCAGCTGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCTCTCCAGATGAAGTACAGTATTACGATTCAACGAACGAAACATATTTAATACGCTCTCCAGATGAAATACTGTGTTACGATTCAACGAACGAAACATATTTAATACGCTCTCCAGATGAAGTACAGTGTTACAATTCAACGAACGAAACATATTTAATACGCTCTCCAGATGAAGTACGGCGTTACAATTCAACGAACGAGACATATTTAATACGCTCTCCAGCTGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCCCTCCAGATGAAGTACAGTGTTACGATTCAACGAACGAGACATATTTAATACGCCCTCCAGCTGAAGTACAGTGTTACGATTTAACGAACGACACATATTTAATACGCTCTCCAGCTGAGGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCTCTCCAGCTGAAGTACAGTGTTACGATTCAACGAACGAGACATATTTAATACGCTCTCCAGCTGAAGTACGGCGTTACGATTCAACGAACGAGACATATTTAATACGCTCTCCAACTGAAGTACGGCGTTACGATTCAACGAACGAGACATATTTAATACGCCTTTCAGATGAAGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCTCTCCAGCTGAGGTACAGTGTTACGATTTAACGAACGAGACATATTTAATACGCTCTCCAGCTGAAGTACAGTGTTACGATTTAACAAACGAGACATATTTAATACGCTCTCCAGATGAAGTGCAGTGTTACGATTCAACGAACGAAACATATTTAATACGCTCTCCAACTGAAGTACGGCGTTACGATTCAACGAACGAGACATATTTAATACGCCCTCCAGATGAAGTACAGTGTTACGATTTAACAAACGAGACATATTTAATACGCTCTCCAGATGAAGTGCAGTGTTACGATTCAACGAACGAAACATATTTAATACGCTCTCCAACTGAAGTACGGCGTTACGATTCAACGAACGAGACATATTTAATACGCCCTCCAGATGAAGTACAGTGTTACGATTTAACAAACGAGACATATTTAATACACTCTCCAGATGAAGTGCAGTGTTACGATTCAACGAACGAAACATTTAATACGCTCTCCAACTGA
- Protein Sequence
- MQYILSYQFDQCGLKISQAVDVMQYILSYQFDQCGLKISQAVDFDQCGLKISQAVDVMQYIFSYQFDQCGLKISQAVDVMQYIFSYQFDQCGFKISQAVDVMQYILSYQFDQCGLKISQAVDVMQYIFSYQLDQCGLKISQAVDFDQCGLKISQAVDVMQYIFSYQFDQCGLKISQAVDVMQYIFSYQFDQCGLKISQAVDVMQYIFSYQFDQCGLKISQAVDVMQYIFSYQLDQCGLKISQAVDFDQCGLKISQAVDVMQYIFSYQFDQCGLKISQAVDVMQYIFSYQFDQCGLKISQAVDVMQYIFSYQFDQCGLKISQAVDVMQYILSYQFDQCGLKISQAVDVMQYIFSYQFDQCGLKISQAVDCYDLTNETYLIRPPDEVLCYDLTNETYLIRPPDEVQCYDLTNETYLIRSPAEVQCYDLTNETYLIRSPAEVQCYDLTNETYLIRSPAEVQCYDLTNETYLIRPPDEVQCYDLTNETYLIRPPDEVQCYDLTNETYLIRSPDEVQCYDLTNETYLIRSPDEVQCYDLTNETYLIRSPDEILCYDSTNETYLIRSPDEVQCYDLTNETYLICSPAEVQCYDLTNETYLIRSPDEVQYYDSTNETYLIRSPDEILCYDSTNETYLIRSPDEVQCYNSTNETYLIRSPDEVRRYNSTNETYLIRSPAEVQCYDLTNETYLIRPPDEVQCYDSTNETYLIRPPAEVQCYDLTNDTYLIRSPAEVQCYDLTNETYLIRSPAEVQCYDSTNETYLIRSPAEVRRYDSTNETYLIRSPTEVRRYDSTNETYLIRLSDEVQCYDLTNETYLIRSPAEVQCYDLTNETYLIRSPAEVQCYDLTNETYLIRSPDEVQCYDSTNETYLIRSPTEVRRYDSTNETYLIRPPDEVQCYDLTNETYLIRSPDEVQCYDSTNETYLIRSPTEVRRYDSTNETYLIRPPDEVQCYDLTNETYLIHSPDEVQCYDSTNETFNTLSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -