Sbis056453.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- Poxn
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000288.1:902735-919948[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-63 3.3e-60 204.5 0.4 1 125 5 130 5 130 0.99 2 4 0.013 36 7.3 0.1 108 125 162 179 154 179 0.92 3 4 2.7 7.2e+03 -0.2 0.0 115 125 205 215 198 215 0.87 4 4 0.028 74 6.3 0.0 110 125 249 264 242 264 0.87
Sequence Information
- Coding Sequence
- ATGCCTCACACAGGCCAGGCCGGGGTGAACCAGCTGGGCGGAGTGTTCGTGAACGGACGTCCGCTACCCGACTGTGTACGCCGGCGTATCGTCGAACTGGCCCTGATGGGAGTTCGCCCTTGCGACATCTCCAGACAGCTTCTCGTCAGTCATGGGTGTGTGTCCAAGATACTCACCAGGTTCTACGAGACTGGGTCCATCCGTCCCGGGAGTATCGGAGGCACCAAGACCAAGCAGGTAGCCACGCCCACGGTGGTGAAAAAGATATTACGATGCAAGCAGGACAACCCCGGCATGTTCGCATGGGAGATTCGTGACCAGTTGCTTACCCAGAGAGTATGTGATCCCCTTACCATCCCCAGCGTCAGCTCTGTCAACCGCATCCTCCGCAACAGTGGGGGTTGGCCCGAGCAGCTCACTCACCAACACCCACCCGGCAACCAACACACACTGGCCCATCCTGATCAATGTAAGTACTGTAGAGTGTGTGATCCCCTTACCATACCCAGTGTCTGCTCTGTCAACCGTATCCTCCGCAACAGTAGGGGATGGCCCGAGCAGCCCACTCACCTACACCCGCCCGGCAACCAACACACACTGGCTCATCCTGATCCAATTGTCAGCTCTGTCAACCGCATCCTCCGCAACAGTGGGGGTTGGCCCGAGCAGCCCACTCACCTACACCCGCCCGGCAACCAACACACACTGGCTCATCCTGATCAATGTAAGTACTGTAGAGTCTATGATCCCCTTACCATACCCAGTGTCAGCTCTGTCAACCGCATCCTCCGCAACAGTGGGGGTTGGCCCGAGCAGCCCACTCACCTACACCCGCCCGGCAACCAACACACACTGGCTCATCCTGATCAATTGACCATTTCCATGATGGAAGGTGGAATGCGTCACTCCCCACCTTTGTTTCCACCCCCATCTTTCTCCGAAGGTGAGGAGCCTCCAGCCAAACACCCCCGGCCATACTCCATAGAAGCCATCCTCCAGAAGCCCGTCCGGAGGCCCAGAGTATCACCCATGCAGAGCTTGCTACTCGTCTACCCGCCCTGTGGTTTGCTGTTAGACCGAGAGTGCACGTGTGGACTTCAGATCAGACACCAGTTAGATCAGTACAGTGAGTGA
- Protein Sequence
- MPHTGQAGVNQLGGVFVNGRPLPDCVRRRIVELALMGVRPCDISRQLLVSHGCVSKILTRFYETGSIRPGSIGGTKTKQVATPTVVKKILRCKQDNPGMFAWEIRDQLLTQRVCDPLTIPSVSSVNRILRNSGGWPEQLTHQHPPGNQHTLAHPDQCKYCRVCDPLTIPSVCSVNRILRNSRGWPEQPTHLHPPGNQHTLAHPDPIVSSVNRILRNSGGWPEQPTHLHPPGNQHTLAHPDQCKYCRVYDPLTIPSVSSVNRILRNSGGWPEQPTHLHPPGNQHTLAHPDQLTISMMEGGMRHSPPLFPPPSFSEGEEPPAKHPRPYSIEAILQKPVRRPRVSPMQSLLLVYPPCGLLLDRECTCGLQIRHQLDQYSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -