Sbis041388.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000158.1:99036-118233[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-12 6.4e-10 41.5 0.0 1 39 229 268 229 272 0.90 2 4 1.2e-11 4.2e-09 38.9 0.1 1 39 283 321 283 324 0.94 3 4 1.3e-16 4.9e-14 54.7 0.0 2 45 339 383 338 383 0.97 4 4 6.4e-18 2.3e-15 59.0 0.1 1 43 390 433 390 434 0.96
Sequence Information
- Coding Sequence
- ATGCACAATCAGAAAAGAGCCTCTCAACTTGTTCAGTCACTTAAAGAGCTTATGATATCTTCTGCGGAAACCCTTACTAACTGTATCACTGTGGCAACATCCACCGATGATGACCTCAAAACTGAGGTATCCGTGCCAGGAGTTGTCATCCTTGAGAGTCGGGTCGCTCACAGTGGTCATGGAGGACACCTCACACATACTGATGCCATCATGATGACAAGTCCGCCTCCCATCATGTCCACACATGCGCACACATTACCCTCTAGTCAAGTATTGTTGGAATCCTCGGGACTAAGTGTCCACTCTGATGTGGAGTCCTTAACTGCCGATGTTGGCACGCAGAACACTTCTCCCTCTCCTTCACTGATCTCATCTCCTCAGCAACATCAGGATATTGCAGTGATGACGCCGGTGGATGACACCAGCCCTGTGAGTCCTCACGAGGACGAGGTCAAGGTCAAGTATGAGACCCTCAGAGCCTTGGAACAGTCAGAACTGAATATGGACCCTGACAGGGAGAATGGACATTTACTGCCGAGCAATAGCCCGGAAGACTCAGCGGAACACACAATGCACACGATGATGATCACTCCAGAGCTCTTGGGCCTGATACCATCTTCCTCCACCGGTCATCAAGAAGTATCAGATAGTGTGAAGCGTGAGGTGACACCCAGCAAGACATGGACACAAGAAGATATGGATGCCGCTCTTGAAGCTCTCCGCAATCACTCAATGAGTTTAACCAAGGCCTCCATCACTTATGGCATTCCCTCTACTACGCTTTGGCAGCGGGCTCACAGGCTAGGAATAGATACTCCCAAGAAGGATGGTCCAGCCAAGTCCTGGACAGAGGATGTCCTTAATGTGGCTCTTGAAGCACTTAGAAACGGCTCCATATCAGCTAACAAAGCTAGTAAGGCTTATGGAATACCTAGCAGTACACTGTACAAGATAGCACGTCGGGAGGGGATCCGGCTGGCAGCACCTTTCAATGCTGCTCCAACTTCATGGAATCCAGAGGACTTGGAGCGAGCTTTGGAGGCTATACGTAGTGGTCAGACAACGGTTCAGCGAGCAGCAGTGGACTATGGCATACCCTCGGGTACGTTGTACGGTCGATGCAAGCGAGAAGGGATTGAGCTGAGCCGAAGCAACCCCACCCCCTGGTCTGAAGATGCTATGACGGAGGCTCTTGAAGCTGTTAGATTGGGTCAAATGAGCATTAACCAAGCAGCCATCCACTACAACCTTCCTTACTCGTCACTATATGGTCGTTTCAAGCGAGTGAAGTACGAGGCTGACCATCCGTCGGAGTCTGAGGAGATACCTCTGACCACGACTACCACCACTACACACCAGAGCCTCCCTGGTCACCAGATCATGCTCGTGCAGTACCAGCAGCCCACGCTCTACCAGCACACGCCTAGCTGA
- Protein Sequence
- MHNQKRASQLVQSLKELMISSAETLTNCITVATSTDDDLKTEVSVPGVVILESRVAHSGHGGHLTHTDAIMMTSPPPIMSTHAHTLPSSQVLLESSGLSVHSDVESLTADVGTQNTSPSPSLISSPQQHQDIAVMTPVDDTSPVSPHEDEVKVKYETLRALEQSELNMDPDRENGHLLPSNSPEDSAEHTMHTMMITPELLGLIPSSSTGHQEVSDSVKREVTPSKTWTQEDMDAALEALRNHSMSLTKASITYGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDVLNVALEALRNGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWNPEDLERALEAIRSGQTTVQRAAVDYGIPSGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGQMSINQAAIHYNLPYSSLYGRFKRVKYEADHPSESEEIPLTTTTTTTHQSLPGHQIMLVQYQQPTLYQHTPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00051675;
- 90% Identity
- -
- 80% Identity
- -