Basic Information

Insect: Allygus modestus
Gene Symbol: -
Assembly: GCA_963675035.1
Location: OY776115.1:7374945-7389128[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.3e-11 1.1e-08 37.3 0.0 1 39 310 349 310 353 0.90

2 4 4.9e-12 4.1e-09 38.7 0.1 1 39 364 402 364 405 0.94

3 4 1.1e-16 9e-14 53.6 0.0 1 45 419 464 419 464 0.98

4 4 2.7e-18 2.3e-15 58.7 0.1 1 43 471 514 471 515 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.3e-11	1.1e-08	37.3	0.0	1	39	310	349	310	353	0.90
2	4	4.9e-12	4.1e-09	38.7	0.1	1	39	364	402	364	405	0.94
3	4	1.1e-16	9e-14	53.6	0.0	1	45	419	464	419	464	0.98
4	4	2.7e-18	2.3e-15	58.7	0.1	1	43	471	514	471	515	0.96

Sequence Information

Coding Sequence: ATGCACCAACCGCAGAGTATGCACCAACCGCAGCCTAGCATGCATCAGCCGCAGAACGCGCAGACACAGAGCGTACATCAGATGCAGAACGCTCACCAGCAACAGAACGTGCACATAGTGCAGCAGCAGACTCTCCACCAGACGCAGAGTCTGCACCAGACTACGCAGCACCTGCAGCAGCACACGCAGCATCTGACGCAGCAGAGCCAGACGCATCAGGAGACTGCGCAGCAAACGCAGATGATCCAAGCTGTCGTGACGACCGTTCATGACCCGTCCAGTCAACACAATCAGATAACGTCGGAAAGCCTGGCCAACTGTATCACGGTTGCCACCAGCACGGACGACGATCTCAAGAGCGGAGTGTCCGGGGTGGTAATACTGGAGAGCCGGGTGGGGGGCCACGGGGGGCACCTGCCCCACCACGCTGACGCCATCATGATGACCAGCCCCCCGCCGATCATGTCCACACACGCTCTCCCCACCTCGCAGCAAGTTCTGCTGGAGTCGTCAGGCCTGAGTGTGCATTCGGATGTTGACTCGCTAACAGCTGATGTCGGGACTCAGAACACTTCCCCCACCTCCTCCCTCATACCTTCACCGAGGCATCACCAAGAGATGACCGTGCTGACGCCCGTGGAGGGGCGCGTGACGGTCGACACCAGCCCGCTGTCCCAGGGCCACGAGGGGGAggaggtcaaggtcaagttcgaGACCCTCCGAGCCATGGAGCAGTCCGACGCCCTGGACATGGACGCTCACATGAGCGTTGACAGGAAGCCGGACAACGGAGAGGAGAGTGTGGAGCACACGATGCACACCATGATGATCACCCCTGAGCTGCTGGGCCTCATCCCCTCCACCACCGGCCACCAGGCGGAAGTGACGGACTGCCCAAAACGCGAGGTGCCGACTTCCAAGACGTGGACGCAGGAGGACATGGACGCGGCGTTGGACGCGCTGCGCAACCACACGATGAGCCTGACCAAGGCCTCCATCACGTTCGGCATCCCCTCTACAACGCTGTGGCAGCGCGCGCACCGCCTTGGCATCGACACGCCCAAGAAGGACGGCCCCGCCAAGAGCTGGACTGAGGACGTGCTGAACGTGGCACTGGAGGCTCTGCGGAACGGCTCCATCTCAGCGAACAAGGCCAGCAAAGCCTACGGCATCCCGAgcagcacactgtacaagataGCTCGGCGGGAGGGCATCCGCCTGGCCGCTCCATTCAACGCCGCCCCCACCACCTGGACTCCCGAGGACCTGGAGCGTGCACTGGAGGCGATCCGCAGTGGGCAGACGACAGTACAACGCGCGGCCGCGGACTTCGGCATCCCCAGCGGCACACTATACGGCCGGTGCAAGCGTGAGGGCATTGAGCTGAGCCGCAGCAACCCCACGCCCTGGAGCGAGGACGCCATGACAGAGGCACTCGAGGCCGTCAGGCTGGGCCAGATGAGTATCAACCAAGCAGCCATCCACTACAACCTGCCCTACTCGTCACTCTACGGCCGGTTCAAGCGAGTCAAGTACGAGGCAGACCACCCAGCGTCGAGTGAGAGCGAGGAGCTGCCCCTCGTAACCACCCACCACAGCCTGCCCGGGCAGATCATGCTGGTGCAGTACCAACAGCCCGCGCTCTACCAGCACACGCCCAGCTGA
Protein Sequence: MHQPQSMHQPQPSMHQPQNAQTQSVHQMQNAHQQQNVHIVQQQTLHQTQSLHQTTQHLQQHTQHLTQQSQTHQETAQQTQMIQAVVTTVHDPSSQHNQITSESLANCITVATSTDDDLKSGVSGVVILESRVGGHGGHLPHHADAIMMTSPPPIMSTHALPTSQQVLLESSGLSVHSDVDSLTADVGTQNTSPTSSLIPSPRHHQEMTVLTPVEGRVTVDTSPLSQGHEGEEVKVKFETLRAMEQSDALDMDAHMSVDRKPDNGEESVEHTMHTMMITPELLGLIPSTTGHQAEVTDCPKREVPTSKTWTQEDMDAALDALRNHTMSLTKASITFGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDVLNVALEALRNGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRSGQTTVQRAAADFGIPSGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGQMSINQAAIHYNLPYSSLYGRFKRVKYEADHPASSESEELPLVTTHHSLPGQIMLVQYQQPALYQHTPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01372222;
90% Identity: -
80% Identity: -