Sbim015984.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020181.1:53824489-53827032[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0013 30 6.2 0.1 7 52 443 493 439 494 0.72 2 4 0.014 3.2e+02 2.9 0.0 23 45 520 542 510 545 0.88 3 4 6.7e-05 1.6 10.3 0.4 21 52 576 607 572 609 0.92 4 4 0.00096 22 6.6 0.0 21 47 632 657 629 660 0.88
Sequence Information
- Coding Sequence
- ATGGAAAATATGATCGCATTATGTAGAGCCTGTTTATCCCAAGAAGTCCATTTATACACCAATGAAGacactcaaaaaaatgaaattttgtcgGGGTTGTTGAACACTTTTACAGCCCTAACAGGCTACGAGaCACATCTTATCTACCTTGGAGGAATCTTTAATTTATGTCAACCCTGCGAAGAGAAGCTAAAACTTTGTTATGACTTTCGTGAATTATGTTTACAATCGTACTCACAACTTGAGCAACAATTCATTAAAATGGAAACAAATGAGGAAATTTCTGGTGAAAATTGTGTAGATTTAGAATCGAATATTGAAATGGTTGGTGTTGATAttgttttcaataataaaattgaaacggtggaaaattttgattctgAAAGTGTAGCAGATGAAAATAAAGTTGCGATTACTAATCCTAGACGTTTGGAAAAATATTCTGAAGAAACCGTGCAGAAATTACTTGATGAATTAAATGATCTGTCAAACGAATTAAAAATGTGTGTCAGTTGTGATTTTGTTGCCGTAAAATTTCTAGATCTTCGTCATCATATGGTTAAGGAACATCCaaacgatAAAGATAATTGGtgtaataaatgtaataaacttTTTCACCCTTTAAAAGAGCATAAACAatgcataaatattttaacatgtaAATTGTGTGGGAAAATTTCAGTTGATCGTGCACACCTTATAAGACATTATCAAGCTCATAccgatagtAGGAACTTCGTTTGTGATCAATGTAATAAATCGTACACCACTAAAAGCGGTTTAGATGTTCATtataaaatgcataaaaatgcCAGGTACAAATGCAAATCTTGTAGTAATTCCTACATATATCAAACTTCTTTACGAAGGCATATATTTAAAACGGGACACTCTCAAGTGGACGCAGAAAAGAAATGTGAAGCTtgcaatgaaaaatttaaaaaccttgaAGATTTTGAAAACCATAAATGCATAAATCAAGCTGTaaattcaattgaaaatgattCAAAAGAAATtgATTTAGAATTAAAAGGTAAAAACAATTCTTCAGGTGCTAAAAAATTTGCTTGTAATCAATGTGAGGAATCGTACACTTCAAGAAAGCAATTATTTATGCACTGTAAATCGCATAATAATGAAACTTacaaatgtgaattttgttcaaatatttACTCACATcaaatttctttacaaaaacatGTACTTGAAGCGCATTCTCAGGTGGACTTTGACCAAAATTGTGAAGcttgcaataaaaaatttagtagcAAAGAAGATTTAGAGAATCACGATTGTACTAATCAAGCTGAAAATTCAGAAGAGGAAAAAAAGCCAGTTACAacggaAACTCCaagtaatttaaatgtaaaaagtaAACGCAAAAAGGCCAAATATTACTTATGTAATATTTGTGGAAAACAACTGagAAGACCTTCAGGATTACGATTACATATGGAAATCCATGCAGGAATAAAACCGTTTAAATGTCAGTACTGTGATTTCAGAACAAGATTAAAAGATATATTAAAGAAACATCAACAAACACACACAGGAATAAAACCACATAAATGTGATGTTTGTCTAAAAagtTTTACTCAAAGTAGCAGCTTAAATTTACATCTTAAAACCCACCAAGGAGACTTAGGAAGATCGCACCCTTGTCTACTTTGCGAAAAAcgatattttcgaaaaattgaTCTTCAATACCATATGCGTGTCCACACTGGTGAAAAGCCTTATCGTTGTACCATTTGCCCACAGGCTTTTATGCAAAGTGGTCATTTAAAACACCATATTAAGCTACATAGCGATGCACGACCACATATTTGTCGTTATTGTGGTAAAGGTTTTAAAGCAACATCTTCTTTAAAGTCTCACGAACTTATACACACAGgagaAAAACCATTTAAATGTACTGTTTGTAATACTGATTTTCGTAAATCAAATCACCTTAAAGTTCACATGAAACGACACATGAAATAA
- Protein Sequence
- MENMIALCRACLSQEVHLYTNEDTQKNEILSGLLNTFTALTGYETHLIYLGGIFNLCQPCEEKLKLCYDFRELCLQSYSQLEQQFIKMETNEEISGENCVDLESNIEMVGVDIVFNNKIETVENFDSESVADENKVAITNPRRLEKYSEETVQKLLDELNDLSNELKMCVSCDFVAVKFLDLRHHMVKEHPNDKDNWCNKCNKLFHPLKEHKQCINILTCKLCGKISVDRAHLIRHYQAHTDSRNFVCDQCNKSYTTKSGLDVHYKMHKNARYKCKSCSNSYIYQTSLRRHIFKTGHSQVDAEKKCEACNEKFKNLEDFENHKCINQAVNSIENDSKEIDLELKGKNNSSGAKKFACNQCEESYTSRKQLFMHCKSHNNETYKCEFCSNIYSHQISLQKHVLEAHSQVDFDQNCEACNKKFSSKEDLENHDCTNQAENSEEEKKPVTTETPSNLNVKSKRKKAKYYLCNICGKQLRRPSGLRLHMEIHAGIKPFKCQYCDFRTRLKDILKKHQQTHTGIKPHKCDVCLKSFTQSSSLNLHLKTHQGDLGRSHPCLLCEKRYFRKIDLQYHMRVHTGEKPYRCTICPQAFMQSGHLKHHIKLHSDARPHICRYCGKGFKATSSLKSHELIHTGEKPFKCTVCNTDFRKSNHLKVHMKRHMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01371647;
- 90% Identity
- iTF_01371647;
- 80% Identity
- iTF_01371647;