Smel041496.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757313.1:13994140-13996973[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0016 48 6.4 0.1 21 45 198 222 190 231 0.80 2 6 0.21 6.3e+03 -0.3 0.0 23 45 228 250 223 253 0.84 3 6 1.3 4e+04 -2.9 0.1 22 30 413 421 410 424 0.85 4 6 0.023 7.1e+02 2.7 0.1 20 34 439 453 436 466 0.74 5 6 0.0003 9.2 8.7 0.1 21 45 468 492 456 495 0.87 6 6 1.9e-06 0.058 15.8 0.2 21 48 496 523 492 531 0.83
Sequence Information
- Coding Sequence
- atgagtgtgtcATATCAAGATTTTTCAAGAATATGCCGAATTTGTTTACGTTCTGGTGATCTACAGCAGTTTACTGAATTAAAAATGttgaatttatttaatatcaTCACAAATATTGAGGTGACGGAGTGTGATACTCtcccaaaaaatatatgtaaaatttgtgtaGACCATTTGGAAAATATTTCTGCGTTTATCGAAAGGTGCAAAGATAGTGatacacttcttaaaaaaatttatcaagaagTTGAAGAAAAGGCAATAATAAGGAATGATATAGATAATGACTCTGATAATAACTGTGATATTGACCAAATCCAAGGAATATTTAGTAAGTCTGAagctgaaaataaagaaaatacagaTTTGACTATTAATAAGAAAGTAAAAAGTGCAGAACATGAGTCTATTGAACCAGacaattcaaataaacgaaaatgttTGGTGTGTGGAAATGATGTAAGTCGAGGAGGACTAAAAAAGCATTACAGGTTTAACCCAAAATGTAGACCAGACGACTGCCGATGTCGAATTTGTGAGAAAACATTTTATCCAAAAAACAAATTAACCCTTCATTTGAGGTCACATAAGAAAGATACCCCTTATGAGTGTCCAGAGTGCTCTAAGAAGTTCTCATTTGCTGAAAATTTAAGGAGACATGCGCTTACGCATAAAGGAGTGAAACCATTTATTTGCGATATATGCAAAAAAGgttttttaagGAAAAGATCTTTGGATGAACACATGAATTTCCATACTGGTAGGATACCATACATATGCGCTTATTGTGGAAAAGGCTTCAAAAGGCTTACCGACCACGCTTCTCATATCTACCACAATCACAACGTAAGCAAAGAAAAAATACCGAAACATAAAAGAAAATACACTGAGAAAAGAGTACACTTAAACATAGAGTGCACAATTTGTGGCAAAATATTTGCTAGCAGATCCGGATTTGCCAACCATCAACTTATCCACAAAGGAGTAAAAAAATTCTTGTGCAATATTTGTGGAAGGAAATTCATAACAAACCCGACCCTGCAAAGCCATATAAGGACTCATACTGGAGAAAAACCGTTCGAGTGTAAAGAGTGCGgcaaaaaattcatacagagaaATTCATTGAATCTGCATATGTCCCATCACATAAGCGACAAATCGCTAAACTGTCCACGTTGTGACAAACGATACTACTCGAAGAACGGCCTAGCTAATCATGTTTTAACACACTCTCTAGAAAAACCCCTGGAATGCCCAGACTGCAACAAACAGTTTTTCCACAAACATGCCTTCCACAATCATGTTTTGAATCACAAGAGTGAAAAACCACATAAATGTAACATATGCGAAAAGACATTTGCATCTCCGTCACATTTAAGTCTTCACCTGAGATCACATACTGGAGAGAAGCCGTACCTTTGTCCAATTTGTGGTAAGCAGCTCGCCCAACCGCAGACACTTAAAGTGCATTTGAGACAGCACACAGGCGAGACACCTTATGTGTGCACAGTTTGTGAGAAAGGTTATCGTGACTCGAGTAACCTCCGAAGGCATTTTAATCGACATCATGGCAACGGTAACAAACCTGGAAAGGGAGTAATTGTAAGAAATGGTGAAGAGAGTACCCAATCCAGTGATATAAAATAG
- Protein Sequence
- MSVSYQDFSRICRICLRSGDLQQFTELKMLNLFNIITNIEVTECDTLPKNICKICVDHLENISAFIERCKDSDTLLKKIYQEVEEKAIIRNDIDNDSDNNCDIDQIQGIFSKSEAENKENTDLTINKKVKSAEHESIEPDNSNKRKCLVCGNDVSRGGLKKHYRFNPKCRPDDCRCRICEKTFYPKNKLTLHLRSHKKDTPYECPECSKKFSFAENLRRHALTHKGVKPFICDICKKGFLRKRSLDEHMNFHTGRIPYICAYCGKGFKRLTDHASHIYHNHNVSKEKIPKHKRKYTEKRVHLNIECTICGKIFASRSGFANHQLIHKGVKKFLCNICGRKFITNPTLQSHIRTHTGEKPFECKECGKKFIQRNSLNLHMSHHISDKSLNCPRCDKRYYSKNGLANHVLTHSLEKPLECPDCNKQFFHKHAFHNHVLNHKSEKPHKCNICEKTFASPSHLSLHLRSHTGEKPYLCPICGKQLAQPQTLKVHLRQHTGETPYVCTVCEKGYRDSSNLRRHFNRHHGNGNKPGKGVIVRNGEESTQSSDIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00886698;
- 90% Identity
- iTF_01370078;
- 80% Identity
- iTF_01370078;