Smel042407.2
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- ken
- Assembly
- GCA_963583905.1
- Location
- OY757313.1:35047710-35056318[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.8 5.4e+04 -3.3 0.0 22 30 12 20 8 22 0.79 2 7 0.048 1.5e+03 1.7 0.3 15 32 154 171 143 186 0.77 3 7 7.4e-07 0.022 17.1 0.0 21 48 218 245 212 251 0.85 4 7 1.1 3.3e+04 -2.6 0.0 27 53 354 380 349 381 0.69 5 7 0.00037 11 8.5 0.2 22 48 405 431 394 435 0.87 6 7 0.012 3.7e+02 3.6 0.1 21 45 432 456 429 459 0.90 7 7 0.0015 45 6.5 0.0 22 44 461 483 457 486 0.90
Sequence Information
- Coding Sequence
- atggaaaaaacaaaaatatgtgtTAGTTTAACTGATTTTCCGATCATTTGTCGGATATGCCTaggtaaaacaaatttaaaaccaTTAGAACAATCTAATTTATTAGATTTATttaagtatattactaatatacaGATTGAATCTGAAGATGTTCTACCTAAAAATCTATGTCTTACATGCATTAATCAATTGGAGGAAATTAGTTCATTCAttgatttatcaaaaaataatgaTGCGAATCTCAAAGAACTTGTTCGTGTAAGCAGATTGGAATCTTTCAATGAGAGGATTGAATCTGAATCAGATATTGCAGACGATCCTACTGAAGTTTTAGATGAACCTGATGATGATCATCCTGATATTAAAGTTGACCTttgtgaaaataaattaattttggaaaataaccTTAAAGATGACATTTCTGCTAAACCAAAGGAAAGTAGAAAAAGAAACAGAAAGACAACAGGGCATTCAACGAAAAGACAACCCTCAAAATGTGAAGTATGTTGTGAATATTTTAGTACAAAAAGTAAATTGACGGAACATCAAAAGATAAATTCAAGCTGTAGAACTAAGCAATATAAGTGTATGAATTGCGAAAAAGCTTTCTTTACAAAATTTAGACTGAACCTTCACATGAGATCTCATACAAAAGAAACACCATTTGAATGCAAAATTTGCTTCAAAAAGTTTAGGCATTCTACAAATTTAAAAAGACATGATGATATTGTCCATAAGGGCTTGAAGCCATTTAAATGTGAAATTTGTGGAAAAGAATATTCAAGACTGGCAACGAAAAATGAACATATGTATATCCATAGTGGTGAGCGTCCACATATCTGTGTTTATTGTGGGAAATCTTTCCGTACTTATTCAAGTTATTTCTACCATGTGTATTGCCATAGACGAAATAATGGTGAAATATCTGAGAGTGAAGCAAaggtaaaaaaatcaaaaacctcAGATTTTACCATCAAGTGTAGCATTTGTGATAAAAGTTATTTGTCTAAATCAGCCGTTTTCCAACATTTACTATTACATggcgaaaaacagtttttgtgTAACACTTGTGGTAAAGCCTTTGTACGGAAACGTCAATTCGAAGACCATTTGAAAGTGCATACAGGAGAGAAACCTCATGTATGCAAGCACTGTGGAAAAGGTTTCAGGCTTTTAAATGGCTACAAAAAACACCTTTTAATTCACACAGGCCAAAAACCTTACCAGTGCAATGTATGTCATAAATCGTTTACACAATCCATGCATTTAAGAACGCATATGAGGATTCATACAGGAGAAAAACCATATAAGTGTACTTTCTGTGGGAAAGCTTTTGCACAAAATTGCAATTTAAAAGTTCATATTAGGATCCACACTGGTGAAACCCCATACCACTGTTCAGTTTGTGGAATGACTTTTATTGATTCCAGCAACTTGAGGAAACATAAAAAAGTACAtgtttaa
- Protein Sequence
- MEKTKICVSLTDFPIICRICLGKTNLKPLEQSNLLDLFKYITNIQIESEDVLPKNLCLTCINQLEEISSFIDLSKNNDANLKELVRVSRLESFNERIESESDIADDPTEVLDEPDDDHPDIKVDLCENKLILENNLKDDISAKPKESRKRNRKTTGHSTKRQPSKCEVCCEYFSTKSKLTEHQKINSSCRTKQYKCMNCEKAFFTKFRLNLHMRSHTKETPFECKICFKKFRHSTNLKRHDDIVHKGLKPFKCEICGKEYSRLATKNEHMYIHSGERPHICVYCGKSFRTYSSYFYHVYCHRRNNGEISESEAKVKKSKTSDFTIKCSICDKSYLSKSAVFQHLLLHGEKQFLCNTCGKAFVRKRQFEDHLKVHTGEKPHVCKHCGKGFRLLNGYKKHLLIHTGQKPYQCNVCHKSFTQSMHLRTHMRIHTGEKPYKCTFCGKAFAQNCNLKVHIRIHTGETPYHCSVCGMTFIDSSNLRKHKKVHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -