Smel005385.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757309.1:77357511-77358824[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00025 0.035 16.8 0.1 1 23 11 33 11 33 0.97 2 11 4.7e-05 0.0066 19.1 0.8 1 20 39 58 39 62 0.95 3 11 3.3e-05 0.0047 19.5 0.7 1 23 72 94 72 94 0.99 4 11 2.7e-06 0.00039 22.9 0.9 1 23 100 122 100 122 0.99 5 11 0.025 3.5 10.5 5.5 1 23 128 150 128 150 0.96 6 11 2e-05 0.0028 20.3 2.9 1 21 156 176 156 179 0.94 7 11 3.4 4.8e+02 3.8 4.7 1 23 185 205 185 205 0.96 8 11 1e-05 0.0015 21.1 0.6 3 23 213 233 212 233 0.99 9 11 5.7e-05 0.0081 18.8 1.6 1 23 239 261 239 261 0.99 10 11 0.071 10 9.1 2.1 1 21 267 287 267 290 0.94 11 11 1.2 1.7e+02 5.2 2.6 1 20 296 315 296 317 0.94
Sequence Information
- Coding Sequence
- ATGACCTATGCAAAAGATAAACTTCGCAAATATGCCTGTGCAGTTTGTGAGAAGAAATTTCAAGGTGCTAATGACCTCCGCAAGCATGTCCGCATACATACGAACGAGAGGCCGTACATATGTAACGAATGTGGCCAGGGATTCCGGCAGGCCGGTTCCCTCAAAAATCACATAATTTGCAAACACTCACCAGGATTGCAGAACAAAGATATTTACGTCTGCAACTATTGCAGCAAAGCGTTTCCTATAAAAGAGAGATTACGGTTACATCTTAGGACGCACACAGGAGATAAACCTTACGAATGTGAACATTGCAGCAAGAGATTTGCAAGAGGAGGACAACTTGTCCAGCACATGCGGGTACATACTGGTTCTAAACCATACCTTTGTCACCTTTGCAACTCAACGTTCACTTGCTCCGCAAACTTGAAACTTCACATGAATAGGCATTTAGAAATAAGAGATTTCATTTGTGATATATGCGGAAAGTCGTTTTTTAGACGAGACGctcttaaaaaacatttaaattgttaTCACGCTAACGTTAAGGCGTTCCACTGTAAAGTTTGCAACAAGGAGCTGAAAGGTCATTTGCCACAGCATATGAGGACACACCAAAAAGACAAACCTCATGGTTGTGCCCATTGCGGTGCTAAATTTGCACAGAGATCACAGCTTACGGTACACCAAAGAATACATAGCGGCGAAAAGCCATATAGATGTCAGGTTTGTTGGCAGGCTTTTGCTCACTCCACAGCATTGAAGCTGCATACGCGCCGACACACAGGTGAGAAGCCATTCGCCTGTGTTCTTTGCGACACGTCTTTCTTACAATTGCCTCATTTGAAGAAGCACATGCTTTGTATACATAAAAGTAATAAACCTTACGTGTGCAGCCACTGCAAGACCTTTCACAAATCCAAAATCGATTTAGAAAATCATTACGTTAAATGTAAAGTACTGAAAAAGAAACCAAAGGtagaagaaattaataaaatagaggGTACTAATATAGAACCACCTATGGCCATAGAGAAAATGAGATTTTTATTGGCTGTTCTTCTGAAAAAGATCTCGGCACCTGATCGCTTAGAGGTATTAGGATTTAACAGAAGACTAATTGATGATGTACTAATAGAATCTATTGAAAAATCGGGTAGGGAACCTTGCAGAGAAGCAGATATATCTGTAGCCGACAAACTGAAAAAGAATGTACAAATTTTGCTTGAGTGGACAGTCCCTAAACAATATATGGAGAAATTTAAAACTGAGCAACGTTCCACAGAAGAACTCTTGGAAGAACTGACATCCTAA
- Protein Sequence
- MTYAKDKLRKYACAVCEKKFQGANDLRKHVRIHTNERPYICNECGQGFRQAGSLKNHIICKHSPGLQNKDIYVCNYCSKAFPIKERLRLHLRTHTGDKPYECEHCSKRFARGGQLVQHMRVHTGSKPYLCHLCNSTFTCSANLKLHMNRHLEIRDFICDICGKSFFRRDALKKHLNCYHANVKAFHCKVCNKELKGHLPQHMRTHQKDKPHGCAHCGAKFAQRSQLTVHQRIHSGEKPYRCQVCWQAFAHSTALKLHTRRHTGEKPFACVLCDTSFLQLPHLKKHMLCIHKSNKPYVCSHCKTFHKSKIDLENHYVKCKVLKKKPKVEEINKIEGTNIEPPMAIEKMRFLLAVLLKKISAPDRLEVLGFNRRLIDDVLIESIEKSGREPCREADISVADKLKKNVQILLEWTVPKQYMEKFKTEQRSTEELLEELTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00641805;
- 90% Identity
- iTF_01014913;
- 80% Identity
- -