Basic Information

Insect: Stenurella melanura
Gene Symbol: -
Assembly: GCA_963583905.1
Location: OY757313.1:1514908-1516642[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.2e-05 0.0018 20.9 3.3 2 23 171 192 170 192 0.95

2 11 9.3e-06 0.0013 21.3 0.7 1 23 198 220 198 220 0.98

3 11 0.00023 0.033 16.9 1.0 1 23 226 248 226 249 0.96

4 11 2.5e-06 0.00036 23.1 1.8 3 23 334 354 332 354 0.97

5 11 4.6e-06 0.00065 22.2 1.8 1 23 360 382 360 382 0.96

6 11 1.5e-06 0.00022 23.7 1.4 1 23 388 410 388 410 0.98

7 11 0.00016 0.022 17.4 4.4 1 21 417 437 417 438 0.93

8 11 0.0073 1 12.2 5.1 2 23 454 475 453 475 0.96

9 11 3e-05 0.0042 19.7 1.6 1 23 481 503 481 503 0.98

10 11 1.4e-06 0.00019 23.9 1.7 1 23 509 531 509 531 0.97

11 11 1.6e-06 0.00022 23.7 4.9 1 23 537 559 537 559 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.2e-05	0.0018	20.9	3.3	2	23	171	192	170	192	0.95
2	11	9.3e-06	0.0013	21.3	0.7	1	23	198	220	198	220	0.98
3	11	0.00023	0.033	16.9	1.0	1	23	226	248	226	249	0.96
4	11	2.5e-06	0.00036	23.1	1.8	3	23	334	354	332	354	0.97
5	11	4.6e-06	0.00065	22.2	1.8	1	23	360	382	360	382	0.96
6	11	1.5e-06	0.00022	23.7	1.4	1	23	388	410	388	410	0.98
7	11	0.00016	0.022	17.4	4.4	1	21	417	437	417	438	0.93
8	11	0.0073	1	12.2	5.1	2	23	454	475	453	475	0.96
9	11	3e-05	0.0042	19.7	1.6	1	23	481	503	481	503	0.98
10	11	1.4e-06	0.00019	23.9	1.7	1	23	509	531	509	531	0.97
11	11	1.6e-06	0.00022	23.7	4.9	1	23	537	559	537	559	0.99

Sequence Information

Coding Sequence: ATGGAAAATGTtcaaataaatattgaaattacagattttcataaaatttgtcgTGCTTGCTTGCATTTCGAAGATATAAAACCTCTGCTTACATCTAATATAGCCTCAATATTCAAGCACCTAACAGACATAGAGATAGAAAACGAAAACAGTTTACCGAAGAATATATGCATTAATTGTATAGAAAAGCTAGAAGATATTTTAACGTTCGTTGAGACATGCAGAAAAAATAATACGTATCTTCAAGATATTCTAACCCGTGCTGAAGAGAAAGCTGCACTTTTAGATTATGAAAACGTACAATGTGATAGTCATGAGGAGGACGACGACGTATTCAATGAAGATGAATTGGAGCAGAAAGATGCAAACGTTGAAACAGATGTAggtgtgaaattaaaaaaatccccAGAGAAAAACAGGAGGAGCAAAAGAAATGTGTCGAAGCATAGTAAAGATAAAAGAAAAAAgtgtgaaattgaaaaaattaagaaaaagcgCATCGAGGAATGTTCCTGTAATGTATGCGGGAAAAAATTTACAAGAAGAGGTGGGTTGAAACGACACTCAAAGATCCACTTGGGCATTAAACCGTTTGAATGTGAAAAATGCGGCAGGACCTTTGTAGAAAAGGCAACATTAAATCGCCACAACTTGACACATACTGGGGAGAAACCGTTTGAATGTAATTTGTGTGGGAAAGCTAGTAATAGAAAAGATCAAATACTCGAGCACATAAATAAACATCATCCCAATGCGGTCAACTGCGACTTCGTAATTACAGAACATAAAAGAATCGAGGTTGAGGATGAGATCAAAAGTGACAACAAAATCTTTGGCAACAAGGAAAATCAAGAGCAAACAAGCGATAACACAGACAGACTGAAATTGGAGAATGTTCAAATGGATGATGATAGTGCCAAGGAGTCCGATACTAACGAAAATTCAAATAACAATGAAGTGCGACAGTTTAAAACTAAGAAAAGAATAGAGATATGCCTGTGCAACCTGTGCGGGAAAGTTTTCAGAAGAAGGGGCTACCTAAAAAACCACATGGCGATTCACGCGAAAATAAAACCGTTCGAGTGTAAAATGTGCGGTAAAGGCTTCACTCAGAGACACGCACTTACACGACACAACTTAGTGCATACAAAGGAGAGACCTTTCCAGTGTAACCTTTGTGGTAAGACTTTCACTAGAAAGGAAATGATGATGGAGCATATAAAGAATCATGAGGAAGGAAAGAAACCTTACCTCTGTTTCCATTGTGGAAAATGTTTCGCCAACAAGGACTACTTGAGCAAACACTTGAAGTATTTCATGATGGGGAAGAAGAAGAGCAATTCAGACGACAAGAAATGTATTTGTCCACACTGCGGGAAACAGTTACATTCCGTTTCTTACTTAAAAACACACCTCTTGACTCATACAGGTGAGAAACCCTTCGAATGCACCATATGCGGGAATAGGTTTACCGTTCAGAGATCCTTGAACCACCACTTGAATATTCATAGGGGAATAAAGCCTTATCAGTGTACGCAATGCGAAAAGGCTTTTCGAACATCCAGCTCGTTGAATAAGCATACTTTACTGCACACGGGTGAGCGACCGTTCAAGTGTACCAGCTGTGAGAAGGGGTTTATTAGACGAAGCCATTTGAAGAGACATTTAAGGACGCACTAA
Protein Sequence: MENVQINIEITDFHKICRACLHFEDIKPLLTSNIASIFKHLTDIEIENENSLPKNICINCIEKLEDILTFVETCRKNNTYLQDILTRAEEKAALLDYENVQCDSHEEDDDVFNEDELEQKDANVETDVGVKLKKSPEKNRRSKRNVSKHSKDKRKKCEIEKIKKKRIEECSCNVCGKKFTRRGGLKRHSKIHLGIKPFECEKCGRTFVEKATLNRHNLTHTGEKPFECNLCGKASNRKDQILEHINKHHPNAVNCDFVITEHKRIEVEDEIKSDNKIFGNKENQEQTSDNTDRLKLENVQMDDDSAKESDTNENSNNNEVRQFKTKKRIEICLCNLCGKVFRRRGYLKNHMAIHAKIKPFECKMCGKGFTQRHALTRHNLVHTKERPFQCNLCGKTFTRKEMMMEHIKNHEEGKKPYLCFHCGKCFANKDYLSKHLKYFMMGKKKSNSDDKKCICPHCGKQLHSVSYLKTHLLTHTGEKPFECTICGNRFTVQRSLNHHLNIHRGIKPYQCTQCEKAFRTSSSLNKHTLLHTGERPFKCTSCEKGFIRRSHLKRHLRTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00886704;
90% Identity: -
80% Identity: -