Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776675.1:164814333-164816076[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.9e-06 0.00091 21.7 3.4 2 23 169 190 168 190 0.95

2 11 2.6e-06 0.00049 22.5 1.3 1 23 196 218 196 218 0.98

3 11 7.9e-05 0.015 17.9 1.1 1 23 224 246 224 247 0.96

4 11 1.8e-06 0.00033 23.1 1.8 3 23 336 356 334 356 0.97

5 11 3.2e-06 0.0006 22.2 1.8 1 23 362 384 362 384 0.96

6 11 1.1e-06 0.0002 23.7 1.4 1 23 390 412 390 412 0.98

7 11 0.00011 0.021 17.4 4.4 1 21 419 439 419 440 0.93

8 11 0.0051 0.95 12.1 5.1 2 23 456 477 455 477 0.96

9 11 1.5e-05 0.0029 20.1 1.5 1 23 483 505 483 505 0.98

10 11 9.5e-07 0.00018 23.9 1.7 1 23 511 533 511 533 0.97

11 11 1.1e-06 0.0002 23.7 4.9 1 23 539 561 539 561 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.9e-06	0.00091	21.7	3.4	2	23	169	190	168	190	0.95
2	11	2.6e-06	0.00049	22.5	1.3	1	23	196	218	196	218	0.98
3	11	7.9e-05	0.015	17.9	1.1	1	23	224	246	224	247	0.96
4	11	1.8e-06	0.00033	23.1	1.8	3	23	336	356	334	356	0.97
5	11	3.2e-06	0.0006	22.2	1.8	1	23	362	384	362	384	0.96
6	11	1.1e-06	0.0002	23.7	1.4	1	23	390	412	390	412	0.98
7	11	0.00011	0.021	17.4	4.4	1	21	419	439	419	440	0.93
8	11	0.0051	0.95	12.1	5.1	2	23	456	477	455	477	0.96
9	11	1.5e-05	0.0029	20.1	1.5	1	23	483	505	483	505	0.98
10	11	9.5e-07	0.00018	23.9	1.7	1	23	511	533	511	533	0.97
11	11	1.1e-06	0.0002	23.7	4.9	1	23	539	561	539	561	0.99

Sequence Information

Coding Sequence: atggaAAATGTTCAAATCaaaataaatgattttgaaaaaatttgccGTGCTTGCCTACGTTTCAAAGACATAAAGCCTCTGCTTACATCTAATATAGCCTCAGTATTCAAAAATTTAACAGACATAGAGCTAGTAGAAGAAAGTGATTTACCGAAGAATATATGCGTTGATTGCATAGAAAAGCTAGAAGATATTTCAACGTTTATTGatacttgtaaaaaaaataatgtataccTCAATAATATTCTGATTAGTGCAGCAGAGGAGAAAGCTGCAGTTTTAGATTATGAAAATGAACAATTTGATAGCCATGAGGACGATGACAACGAAGACGATCCTGAAGATAAAGATGTAAACGTTAAAACAACTCAACAAGATATAAAATTAGAAGAACCTGCCCCAGAGAAAAACAGGAGGAGTAAACGAAATGTGACGAAGCAGCGTAAAGATAAAAAAAAGAAGTGTGaggctgaaaaaattaaaaaaaagcgCATAGAAGAATGTTCCTGTAATATATgtggaaaaaaatttacaagaagGGGTGGGTTAAAACGACACTCAAAAATTCATTTGGGGATTAAACCGTTTGAATGTAAAAAATGTGGCAAGACATTTGTAGAAAAGGCCACGTTAAACCGTCATAACTTAACGCATACTGGGGAGAAACCCTTTGAGTGTAATCTATGTGGGAAAGCAAGTACAAGGAAAGATCAAATACTCGAACACATAAATAAGCATCATCCAAATGCTGTTAACTGTGACTTTGTAATTACCGAACATAAAAGAATTGAGATTGACAATGATAACAAAAGTGACAGTGAAAACCTGGGTAACAAGGAAAACCAAGGGCAAAAAAGCGACAACGCATATAGACTGACACCGGAAAAAATTCAGAAGAATGATGATAGTGCTAAAGACATAAATTCAGAGTCTGATACTAATGAAAATTCAAACAACAATCAGGTGAGACAGTTTAAAACCAAGAAGAGGATCGAGATATGCTTGTGCAACTTGTGTGGAAAAGTTTTTAGGAGGAGGGGATATCTAAAAAATCACATGGCAATTCATGCGAAAATAAAACCCTTTGAGTGCAAAATGTGTGGTAAAGGTTTCACTCAGAGACATGCACTTACACGGCACAATTTAGTGCATACAAAGGAGAGACCTTTTCAATGTAATCTTTGCGGGAAGACTTTTACTAGGAAGGAAATGATGATGGAACATATAAAGAATCATGAAGAAGGAAAGAAACCTTATCTGTGCTTCCACTGTGGAAAATGTTTTGCCAACAAAGACTACTTGAGTAAACACTTGAAGTATTTCATGATGGGAAAGAAGAAGAGCAATTCGGAAGACAAGAAATGTATTTGTCCGCACTGTGGGAAACAATTACATTCCGTTTCTTACCTGAAGACCCATCTCTTGACTCATACAGGGGAAAAACCTTTCGAATGCAACATATGCGGGAATAGGTTTACTGTACAGAGATCCTTGAACCACCACTTGAATATTCATAGGGGAATAAAGCCTTATCAGTGTACGCAGTGCGAGAAGGCTTTCCGAACGTCAAGCTCTTTGAATAAACATACCTTACTGCACACAGGAGAGAGACCTTTCAAATGCACGAGCTGTGAAAAGGGATTTATTAGGCGAAGTCATTTAAAAAGACATTTAAGGACTCATTAA
Protein Sequence: MENVQIKINDFEKICRACLRFKDIKPLLTSNIASVFKNLTDIELVEESDLPKNICVDCIEKLEDISTFIDTCKKNNVYLNNILISAAEEKAAVLDYENEQFDSHEDDDNEDDPEDKDVNVKTTQQDIKLEEPAPEKNRRSKRNVTKQRKDKKKKCEAEKIKKKRIEECSCNICGKKFTRRGGLKRHSKIHLGIKPFECKKCGKTFVEKATLNRHNLTHTGEKPFECNLCGKASTRKDQILEHINKHHPNAVNCDFVITEHKRIEIDNDNKSDSENLGNKENQGQKSDNAYRLTPEKIQKNDDSAKDINSESDTNENSNNNQVRQFKTKKRIEICLCNLCGKVFRRRGYLKNHMAIHAKIKPFECKMCGKGFTQRHALTRHNLVHTKERPFQCNLCGKTFTRKEMMMEHIKNHEEGKKPYLCFHCGKCFANKDYLSKHLKYFMMGKKKSNSEDKKCICPHCGKQLHSVSYLKTHLLTHTGEKPFECNICGNRFTVQRSLNHHLNIHRGIKPYQCTQCEKAFRTSSSLNKHTLLHTGERPFKCTSCEKGFIRRSHLKRHLRTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01296709; iTF_01290603; iTF_01370073;
90% Identity: -
80% Identity: -