Smel033613.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenurella melanura
Gene Symbol
-
Assembly
GCA_963583905.1
Location
OY757312.1:10893156-10901639[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.2e-05 0.0017 20.9 1.3 1 23 219 241 219 241 0.98
2 12 0.0004 0.057 16.1 0.5 2 23 246 267 245 267 0.97
3 12 2.8e-08 3.9e-06 29.2 1.6 1 23 273 295 273 295 0.99
4 12 0.00022 0.031 17.0 4.1 3 23 303 323 301 323 0.96
5 12 1.7e-05 0.0024 20.4 0.3 2 23 330 351 329 351 0.96
6 12 0.00029 0.041 16.6 4.0 1 23 357 379 357 379 0.97
7 12 1.8e-06 0.00025 23.5 0.5 1 23 385 407 385 407 0.99
8 12 5.1e-05 0.0073 18.9 4.2 1 23 413 435 413 435 0.99
9 12 3.1e-06 0.00044 22.8 0.1 1 23 441 463 441 463 0.99
10 12 4.2e-06 0.0006 22.3 2.1 1 23 469 491 469 491 0.98
11 12 0.0018 0.26 14.1 3.1 1 23 497 519 497 519 0.97
12 12 1.3e-06 0.00019 23.9 0.9 1 23 525 547 525 547 0.99

Sequence Information

Coding Sequence
ATGACTGACGTGAAGATTATAACATGCATTGATAGACTTTGTCGAACGTGTTTGTCTGAGAAAAGTTCAGAGGAATTACGGTCACTATTTGAAAATTCCCTAGAAACTCAACTTACAGAAATTACATCTGTAAAGGTAGAAGACGATGATGGTTTACCTAATAATATATGCAACTCCTGTTATTATACACTGAACGTAGCCTTAAATTTCAAAGTACAGTGTCAGAAGTCTGAATCTAAGTTACGAAGCGCTTTGTGTCCTGATCAGACAATAATATACAGGTCCATTACAATTCTAGGAAATAACACCGATGATTTACAcatagaaaattttgaggaagTAGATTCAGATTTGCCTTTATCGAACGATGATAATACGTTGACGGAAACTAtagaaattacaaataatttcgCAAATGGGAAAATCGAGTCTGAAACTATATATTTGAAAACTGAAGGTAATCCAAATAAATACGTAGAAGCAAGTGTTAGTACGGAGAATAATTTTGGAAATGCTGATTCTGATGATGGACAATCTGAAAATGATACCCCAGCCAGTCCTACAGTGGCAGATCAAACTGAACAAGTTGAAAATAAGATTGAAGTTACATCTGATGTAAAGCCAGAGTCAGTTAAATTGGAAACCGCTTCCCCATTTACTTGTTATGAATGTGGGAAGACATTTAGGTTTGAAAGTGGTTTGAAAACACACTGGATTAAGCATGGAATAAACCTACAATGTGATCTATGTGGTGAAGAATTTAATATGTTGAAAGATTTCAACTCTCATTTGAAGACACACCCCAATTATAGGCCATATAAATGCAAAGTGTGTGGTAAAAGTTTCTCTCTTTCAACTAGCCTTGCGAAGCACATGAGAACTCACGGCGGAGAGAGGAAACACCTGTGTACTATTTGCGGGAAAAGGTTCTTCGAGCAGAATCATCTCACTaTTCATACTCGTATACATACAGGAGAAAAACCGATAGTTTGCAGTATTTGTGGAAAGCGATTTTCAGATCCTCATGGCTTAGCAACACATAACAAGATACATACAGGAGAGAGAAAACATGAATGTAATTTCTGTGGCAAAAAATTCGCACACTCGTTTGTCCTTACGGCCCATAAGAGAATACATACTGGTGAAAGGCCCTATAGATGTAGCATGTGTGACGCTGCTTTTGCAACTTCGTCTTACCTAACTATCCACACACGTACCCACACTCAAGAACGGCCCTATAAATGTGAAACGTGCCCCAAGTCATTCATCAGTAAATGTGCTTTGGCTTCCCATCATAGGTCTCACACAGGAGAGAAGAAGTATCAGTGCGCCCTTTGTGGCAAGAGGACGGGACGTGCCGCAGATCTACAGATCCATATGAGGACTCATACTGGTGAAAGGCCCTACGCTTGTGAACAATGTCCGAAAAGCTATCATACTTCAAGCAACCTGGCCACGCATAGGAGAACACACTTGGGCATAAAGGATCATATTTGTACGGTTTGTGGAAAGGGATTTGGAGACCCACGTACCTTAAAATGTCACTATAGGACACACTCAGGAGAAAAACCTTATGTATGTAGGGTATGTGGAAAATGCTACACCCAGGCCGGGCAATTGGCAGCCCACCGGAAGACTCACGCATCTGCAGTTCCTATTGAGACGTATTGA
Protein Sequence
MTDVKIITCIDRLCRTCLSEKSSEELRSLFENSLETQLTEITSVKVEDDDGLPNNICNSCYYTLNVALNFKVQCQKSESKLRSALCPDQTIIYRSITILGNNTDDLHIENFEEVDSDLPLSNDDNTLTETIEITNNFANGKIESETIYLKTEGNPNKYVEASVSTENNFGNADSDDGQSENDTPASPTVADQTEQVENKIEVTSDVKPESVKLETASPFTCYECGKTFRFESGLKTHWIKHGINLQCDLCGEEFNMLKDFNSHLKTHPNYRPYKCKVCGKSFSLSTSLAKHMRTHGGERKHLCTICGKRFFEQNHLTIHTRIHTGEKPIVCSICGKRFSDPHGLATHNKIHTGERKHECNFCGKKFAHSFVLTAHKRIHTGERPYRCSMCDAAFATSSYLTIHTRTHTQERPYKCETCPKSFISKCALASHHRSHTGEKKYQCALCGKRTGRAADLQIHMRTHTGERPYACEQCPKSYHTSSNLATHRRTHLGIKDHICTVCGKGFGDPRTLKCHYRTHSGEKPYVCRVCGKCYTQAGQLAAHRKTHASAVPIETY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00886692;
90% Identity
-
80% Identity
-