Lqua046096.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776677.1:151028643-151041147[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.6e-06 0.00048 22.5 2.0 1 23 224 246 224 246 0.98 2 12 0.00028 0.053 16.1 0.5 2 23 251 272 250 272 0.97 3 12 6.7e-08 1.3e-05 27.5 1.8 1 23 278 300 278 300 0.99 4 12 0.00011 0.02 17.4 5.0 3 23 308 328 306 328 0.96 5 12 9.7e-06 0.0018 20.7 1.4 2 23 335 356 334 356 0.97 6 12 1.8e-05 0.0034 19.9 4.0 1 23 362 384 362 384 0.98 7 12 1.2e-06 0.00023 23.5 0.5 1 23 390 412 390 412 0.99 8 12 3.1e-06 0.00057 22.3 1.2 1 23 418 440 418 440 0.99 9 12 6.9e-06 0.0013 21.2 0.1 1 23 446 468 446 468 0.99 10 12 7.9e-05 0.015 17.9 4.4 3 23 476 496 474 496 0.98 11 12 0.00031 0.058 16.0 1.3 2 23 503 524 502 524 0.97 12 12 4.3e-07 7.9e-05 25.0 0.3 1 23 530 552 530 552 0.99
Sequence Information
- Coding Sequence
- ATGACTGATATAAAGATTATAACATGCTTTGACAGGCTTTGTAGAACATGTTTATCTGAGAAAGATATAGGAGAATTGCGGTCGCTGTTTGAAAATTCTCTAGAAACTCAACTTACAGAAATTACAtctgtaaagGTAGAACAAAATGATGGTTTACCGAGTAACATATGTAGTTCCTGTTATTATACACTGACTGTAGCCTTAAATTTCAAACTACAGTGCCAGAAGTCTGAGTCTCAGCTACGAAGTGCTTTGTGTCCCGAgcaaacaataatatataggtCAATTACGATATTAGGGAATAACTCTGATGATTTACAAATACAGAATTTTGAGGAAATTGAGTCAGATTTGCCTTTATCGAATgctgaaattgaaataaataacgtAGGTACTTCTTTGTCCTTGACTGAAACCATAGAAATTAGGAACAATTTTCCAGATGGTACAATCAAATCTGaaactatatatttaaaaactcaaGGTAGtccaaacaaaattaaatatatagaatCAAATGTTAGCGTGGAAAATGAGAATAATCGTTCTGACAATGAACAATGTGAAAATGATGTTGATTCCACAATGCCAGATCAAAGCGAACAAGTCGCAACCATTGTGGAAGTAACTGATGTGTCAGAgatagaaaaaattgaaaacactTCCCCATTTACATGTAAACAGTGCGGAAAGACATTTAGATTTGAGAGTGGTTTGAGAACTCATTTGATTAAGCATGGTAGGAAATTGCAATGTGAAATATGTGGTGAAGAATTTAATGCATTCAAATATTTCAACTCTCATTTGAGGACGCACCCCAACTATAGGCCATATAAGTGCAAAATATGCGGTAAGACTTTCTCTCTTTCAACTAGTCTTGGGAAGCACATGAGAACTCATGGCGGAGAAAAGAAACATCTCTGCACGATCTGTGGGAAGAGGTTCTTCGAGCAGAATCATCTCACTATTCATACTCGTACACATACAGGAGAGAAACCGATAGTTTGCAGTACTTGTGGAAAGAGATTTTCGGATCCTCACGGCTTAACAACGCATAACAAGACACATACGGGAGAGAGAAAACATGAATGCAATATCTGCGGTAAAAAATTCGCTCACTCATTTGTCCTCAAAGCTCATAAAAGGACGCATACTGGTGAGAAGCCCTATAGATGTAGCATGTGTGACGCTGCCTTCGCAACTTCATCTTATTTGACCATCCACACACGAACTCACACTCAAGAAAGGCCCTACAAATGTGAAACATGTCCCAAGTCGTTCATCAGTAAATGTGCTTTGGCTGCCCATTATAGAATTCACACAGGAGAAAAGAAGTTCCAATGTGCGCTGTGTGGCAAAAGGACGGGACGTGCCGCAGATCTACAGATTCATATGAGATCTCATACTGgtgaaaggcCCTATGGTTGTGATCAATGCCCGAAGTGCTACCATACCTCGAGCAACCTGGCTACGCACAGGAGAACACACACCGGCATAAAGGACCAGGTGTGTACGGTTTGCGGAAAGGCATTCGGAGATCCACGCACCTTAAAATGTCACTACAGGACGCACACAGGTGAGAAACCCTACGTGTGTAGGGTTTGTGGGAAAAGCTACACGCAGTCTGGACAGTTGGCAGCGCATAGGAAGACTCATGCAAATCCCGATAAGACTTGCTGA
- Protein Sequence
- MTDIKIITCFDRLCRTCLSEKDIGELRSLFENSLETQLTEITSVKVEQNDGLPSNICSSCYYTLTVALNFKLQCQKSESQLRSALCPEQTIIYRSITILGNNSDDLQIQNFEEIESDLPLSNAEIEINNVGTSLSLTETIEIRNNFPDGTIKSETIYLKTQGSPNKIKYIESNVSVENENNRSDNEQCENDVDSTMPDQSEQVATIVEVTDVSEIEKIENTSPFTCKQCGKTFRFESGLRTHLIKHGRKLQCEICGEEFNAFKYFNSHLRTHPNYRPYKCKICGKTFSLSTSLGKHMRTHGGEKKHLCTICGKRFFEQNHLTIHTRTHTGEKPIVCSTCGKRFSDPHGLTTHNKTHTGERKHECNICGKKFAHSFVLKAHKRTHTGEKPYRCSMCDAAFATSSYLTIHTRTHTQERPYKCETCPKSFISKCALAAHYRIHTGEKKFQCALCGKRTGRAADLQIHMRSHTGERPYGCDQCPKCYHTSSNLATHRRTHTGIKDQVCTVCGKAFGDPRTLKCHYRTHTGEKPYVCRVCGKSYTQSGQLAAHRKTHANPDKTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01370060;
- 90% Identity
- -
- 80% Identity
- -