Smel076822.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- Hr39
- Assembly
- GCA_963583905.1
- Location
- OY757317.1:92028039-92054734[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.11 4.8e+03 -1.1 3.7 52 106 201 256 92 319 0.58 2 4 1.2e-08 0.00055 21.8 0.0 1 28 387 414 387 457 0.75 3 4 0.076 3.5e+03 -0.6 0.0 88 116 449 477 428 498 0.73 4 4 4.4e-73 2e-68 234.0 0.2 205 408 518 716 497 716 0.96
Sequence Information
- Coding Sequence
- ATGGCCGCAGACATGAGGTCCCCCAACGTATCCGTTACTCCAATAAACATGGAGCCCTATCCACCTCCTGTCCTCTCTAATGGGGACCATCGTCCCCCTAGCGAGCCACCCCAGAGAACAAGAAGCGCACCCCATCCAGCAGCTCTAATTACGAATgGTACTACTGATCTTTTGGATAGTTCCGATGCAGAGGTGGCCAGAATAGACTTCCATGCGGTAAATATGAGATCGAAAAAGAAAAGGGATGATATACCGAGGCCGATGAGTTGGGAGGGTGAACTTTCGGATGGAGAGAGAGATGGCATGTGTGTGGATGAAGAAAATTCGGCACAGGTTCCCGAAAACCTTTCGCTGTCGCAATCCAAACAGTGCTCCCTATCAGATTCAAAAGAGAGCCCCATTTTGCGACTGAAGCAGCCTCCTATGGGCAACTACTCGTTACACAGCACACCGAGCAATTCACCATTACTTAGCCAACGTCATCCTGCAGGTGTGCCGATCATAAGCCATAAGGATCTCATGCACAAGGCTCTGAACGTCCCCCCCACCCCCAGCCCCGATTCAGCGATCCACTCAGCGTACAGTGTTTTTAGTTCACCGAATCAAAGCCCCTTGACTCAGAGACATATTACTCTAACCCCAAATTTGAGTAGGAATAATAGTGACGCGTCTCATTCGAGCTGCTGTAGTTATAGTAGTGTCTCTGTTTCTGTGTCGCCCACTCAGCAGTTCTCCCCTACGCACAGTCCCATACAGGGACGCCATATGCACAGTATTCATAGTAGCCCCTTACACCACAATATACTTTATCGAAGCCTCCAGGAAGACCCCACCATACAGTACACCACCGAGCACGACACTCTTGACGAACCCGAAGACAAAGCAGGACTCTTACATACATCACTACCCGCCCAACCAGGCATATCCAGGCAGCAACTTATCAACAGCCCATGCCCTATTTGTGGGGACAAAATATCTGGTTTCCATTATGGTATTTTCAGCTGTGAATCATGTAAAGGCTTTTTTAAAAGGACTGTGCAAAATAGGAAAAACTACGTGTGCCTAAGAGGAGCTCAGTGTCCAGTGACGGTTGCTACAAGGAAGAAGTGTCCAGCTTGTCGATTTGATAAATGTCTTCAATGTGGAATGAAACTAGAAGCAATTAGAGAAGATAGAACACGTGGAGGTCGTTCAACATATCAGTGTTCATATTCATTGCCACCGTCATTAACTAATCATGCTGAACTAAGGGCCAGCTCGACTGATTTAAGGCAAGGAATGGGAGAAACCCATCCTGGATTTACCGTAAAACTAGAACCTCCAGATTCGGGGGTTCCACATCACAAACGGAATACTTTGCCAGGATCGAAAGGTGTCCCACCATTATTGCAAgaaataatGGATGTGGAGCACCTATGGCATTACAACGAAATGGAACTGAACAAACTGAGTACAGAAGGCCATCTAGGGAAGGAAGGTTCAAGTGGGGCTGTGCATAACCTCTCTACGCATCCGTTACTTGCTGGTACAGCACTGGCTGGATCAACGGATACTAACCCCGATTTTGTAGCAAATCTCTGCAATATAGCAGATCATAGACTTTATAAAATAGTGAAGTGGTGTAAGAGCCttcctttatttaaaaatatatcgattgaCGATCAGATATGTTTGCTCATCAATTCGTGGTGTGAGCTTCTCTTATTTTCCTGTTGTTTTCGGTCTATGTCATCTCCTGGCGAAATAAGGGTGTCCCTGGGGAAGAGCATAAACCTGGCGCAAGCCAGGGAAATGGGGATGCAAGCCTGTATAGAGAGAATGTTAAATTTCACAGAGCAGCTTAGGAGGCTTCGAGTGGATCAATATGAATACATAGCCATGAAAGTCATTGTTCTTCTTACGTCAGATACTTCAGAGCTCAGAGAAGCCGAAAAAGTCAGAGTCTCGCAAGAAAAAGCTTTAAAAGCCCTACAGGATTACACTTTGTCACATTACCCTGAAAGTCCTGCCAAATTTGGGGAACTTCTCCTGCGTATTCCTGAGTTGCAACGAACTTGCCAGGTCGGAAAAGAGATGTTAACAATAAAATCGAAAGACGGTGACGGACCTAGCTTCAACCTCCTCATGGAGCTCCTAAGAGGGGACCACTAA
- Protein Sequence
- MAADMRSPNVSVTPINMEPYPPPVLSNGDHRPPSEPPQRTRSAPHPAALITNGTTDLLDSSDAEVARIDFHAVNMRSKKKRDDIPRPMSWEGELSDGERDGMCVDEENSAQVPENLSLSQSKQCSLSDSKESPILRLKQPPMGNYSLHSTPSNSPLLSQRHPAGVPIISHKDLMHKALNVPPTPSPDSAIHSAYSVFSSPNQSPLTQRHITLTPNLSRNNSDASHSSCCSYSSVSVSVSPTQQFSPTHSPIQGRHMHSIHSSPLHHNILYRSLQEDPTIQYTTEHDTLDEPEDKAGLLHTSLPAQPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAQCPVTVATRKKCPACRFDKCLQCGMKLEAIREDRTRGGRSTYQCSYSLPPSLTNHAELRASSTDLRQGMGETHPGFTVKLEPPDSGVPHHKRNTLPGSKGVPPLLQEIMDVEHLWHYNEMELNKLSTEGHLGKEGSSGAVHNLSTHPLLAGTALAGSTDTNPDFVANLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSSPGEIRVSLGKSINLAQAREMGMQACIERMLNFTEQLRRLRVDQYEYIAMKVIVLLTSDTSELREAEKVRVSQEKALKALQDYTLSHYPESPAKFGELLLRIPELQRTCQVGKEMLTIKSKDGDGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00753059;
- 90% Identity
- iTF_01014531;
- 80% Identity
- iTF_01369889;