Smel034291.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757312.1:28397195-28413299[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-09 5.7e-07 31.4 0.0 2 35 17 50 16 57 0.92
Sequence Information
- Coding Sequence
- atgccTAAAGTAAGGAAGTCTGCTACGAAATATCAAAAAAAGTATAACGAAGACGATATTGTGTTAGCATTGCAAGCTATAAAGGATGGAATGTCTAAAAAGAAGGCTTCTGTCCAGTTTGGTGTGCCCCGCAGCACGCTACAATTTAGAATTTCtgataaatttacaaaaacaagTCATGGACCGGCAACAGTATTAACAAATGAAGAAGAAACACTTTTGGTTAATTGGATATTGGAAAGTCAAAGAAAAGGATTTCCGAAGAGGAAAGATGATATCCAAGCATCAGTTAAGATTTTTCTTGATAAGACAAATAGacaaacaatatttaaagataatttacctGGAGATAGGTGGTACAAATCATTTTTACGACGTCATCCAAGTATAAGGGAAAGAACACCGGAAGGAGTAACCCAAAGTAGTGCATGCATTTCCAGCAAAGATTTATTAAAATGGTTCGATGACATTGAACTTTACCTGAAAGAGAAAggatattttaccattttaaatgATCCTAAAAGAATTTATAATGGCGATgaaacttgttttttatttaatccgAAGGATGGAAAGGTGCTGGCTCCTAAAGGATGCAAAAACGTGTATGAGGTTGACCGAGGCTCTGCAAAGTCCAATTTAACTGTGATGTTTACTTTCTCCGCTGCAGGTGATGTTACCCCGCCAATGATTATCTACCCATATAAGAGACTACCACAAAGTATTGCGGAATCCGTTCCTAAAACTTGGGGAATTGGTATAAGTGATAATGGGTGGATGAAGTCGGAACTATTTTACGAGTACGTGGCTAACGTTCTCCATCCTCATCTTGTGAAATCTGACGTGCAGTTtccaataatttattttgttgatgGTCATAAGACACATCTAACATACCAATTAAGTGAACTATGTACCAATctaaaaatcattttgattgcATTATACCCTAACTCTACAAGGCTTCTTCAACCAGCAGACGTTGCTGCTTTTAAACCTATAAAAAATTGTTGGAAGCGTAGTATTTTGGCATGGAGAAGAGAAGAGCCCATTGCACAACTCACAAGAGATAAGTTTGCACCTATATTGAAAAAGGTTGTGGACTTAATTAAacctgaaaatttaataaatggaTTTCGTTCCTGTGGCCTTTATCCGTGGAAGCCTTCAGCTGTTGATTTATCGAAGTGTTTGGGAAAAGAAAAAAACCTACAAGATATTAACGAAGTCGAAAATACCTTTTTAACATACGAGTCTTTTTGTGATATTGTTGGTGAAGACAAAATACTTCAATTAAAGAACGCCAAATCAAATAGGTTTGAAGACAaagaaaatgatattttattgaaactaTGGACAACGTTTAACACAAATAACGTTGATATCGATTCTGATAGTATGAACCAACCTCATTTAACAAACAACGACAATACTCTAGATCCCAAAAATGTCCTCACGTCAACGTTTACAGATGATATACAAGCAAAAAATATATCAGATAGATCAGAGTCGAAAAAAGATAAATCAATAAATGCAGAATTATATGATCATCCTAACATGGAACCCAACAATGGAACTGAAATATCACATGATAAATCTGTGTCTTATGAATATACTAGATTAATTTCTGGAATTACTTTAGAAACCCAACACAGTAGTCCTACATTTTCATGCAACTTATCTGACATCCCTATTATAGTTCTTAATGGCAATACAAGTGAAACGTTAACGTCAGAACAGGAACTTAACAGTAACGTAATAATAGAAGAGATATACGGAAATGATAGAGATATAGAAAATGACAAATCAAACTTACTATTAGATAACAATAATTCTACTTCTAGAAATTTAGAGGATTTCTTGGTATGGCCTGAAACGCCAcaacgaaaaaataaaaaaaatgttgaacgaTTACCATATGTAATTACTTCAAGTGGATGGAAAAAAATTCAAGATGAAAAAAGAGCTGCAAAAGCGAAAAAAGAagaagagaaagaaaataaacgaAAGGAACgactaaaaaagaaagaaaatgaaGTTATTAGCAAagcaaaaaacaaacaaaaagttcCAAAAAAAATAGTGGAAAAGAAAAAGAATGTTGGAGtgaaaatattatcaaatattGCAATCAATGCTATAGAAGAGACCAAAAGTAGTTTGACTAGAAAAGAAAGACATGTGAGAAATATTGCTGCTGAAGATGATGCAAGATACTCTAGTGTTATCCAGAATTTCTCTAGAATTGACTATGCCAAAGAAACTGCTGCATGTGAAATTGAAATACCTGAAATAGAGACcccttctttaaatttaaatgtctCATCTACTGACGATAATGTTCTTGTGACATCCGGTTTATGTTTTATCTGCACAAATAATGTCAATTGTGTGAATATAGAACCACTTGAAGAGACTGATGCAGATCTGTTCCGAAAATTTATTGAGTGTGCCAGAATAGCCATTGTTACTGGCATTCCAGAAATTGGACTACCAAGTCATGATCCTCTTATCATTTCGCACGATTTTTATGAAGAGATTGATCTTCCACTTGATGTTCCAGGAGCTATCACGTATGCAAATATATCTTACAATAATACCCATAGAACGGGTTGCGCTTAA
- Protein Sequence
- MPKVRKSATKYQKKYNEDDIVLALQAIKDGMSKKKASVQFGVPRSTLQFRISDKFTKTSHGPATVLTNEEETLLVNWILESQRKGFPKRKDDIQASVKIFLDKTNRQTIFKDNLPGDRWYKSFLRRHPSIRERTPEGVTQSSACISSKDLLKWFDDIELYLKEKGYFTILNDPKRIYNGDETCFLFNPKDGKVLAPKGCKNVYEVDRGSAKSNLTVMFTFSAAGDVTPPMIIYPYKRLPQSIAESVPKTWGIGISDNGWMKSELFYEYVANVLHPHLVKSDVQFPIIYFVDGHKTHLTYQLSELCTNLKIILIALYPNSTRLLQPADVAAFKPIKNCWKRSILAWRREEPIAQLTRDKFAPILKKVVDLIKPENLINGFRSCGLYPWKPSAVDLSKCLGKEKNLQDINEVENTFLTYESFCDIVGEDKILQLKNAKSNRFEDKENDILLKLWTTFNTNNVDIDSDSMNQPHLTNNDNTLDPKNVLTSTFTDDIQAKNISDRSESKKDKSINAELYDHPNMEPNNGTEISHDKSVSYEYTRLISGITLETQHSSPTFSCNLSDIPIIVLNGNTSETLTSEQELNSNVIIEEIYGNDRDIENDKSNLLLDNNNSTSRNLEDFLVWPETPQRKNKKNVERLPYVITSSGWKKIQDEKRAAKAKKEEEKENKRKERLKKKENEVISKAKNKQKVPKKIVEKKKNVGVKILSNIAINAIEETKSSLTRKERHVRNIAAEDDARYSSVIQNFSRIDYAKETAACEIEIPEIETPSLNLNVSSTDDNVLVTSGLCFICTNNVNCVNIEPLEETDADLFRKFIECARIAIVTGIPEIGLPSHDPLIISHDFYEEIDLPLDVPGAITYANISYNNTHRTGCA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01369112;
- 90% Identity
- iTF_01369103; iTF_01369104; iTF_01369105; iTF_01369106; iTF_01369112; iTF_01369113; iTF_01369114;
- 80% Identity
- -